| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2886 |
|---|
| Symbol | |
|---|
| ID | 5199249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3170794 |
|---|
| End bp | 3171591 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640582436 |
|---|
| Product | putative hemolysin-like protein |
|---|
| Protein accession | YP_001263376 |
|---|
| Protein GI | 148555794 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3176] Putative hemolysin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.801461 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.222823 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACGC AGGCCCTCGA TCGGGTTGAA CGCCGCCTTG CCGTCCGGCT CGCCGATGGC
GCGGCCGACG TCGTCGCGGC GCAGCGATTG CGCTACGACA TCTTCTTCCG CGACATGGGC
GCGACGCCCG AGCCGCAGGC GGCCGACGCC GGCCAGGGCC GCGACGTCGA CCCTTACGAC
ATGCTGTGCG ACCATCTGCT GGTCGAGGAC CATGCGCGCG CCGGCAGCCC GGTGGTGGGC
ACCTATCGGC TGCTCCGCCA GAGCGTCGCC GAGGCGCATG ACGGCTTCTA TTCGGCGCAC
GAGTTCGACC TGTCGGCGGT GATCGCGCAC GGCCGGCGCG AGGGCGTCGA GCTGCTCGAA
CTCGGCCGTT CCTGTGTCGA CCCCGCCTAT CGCGACGCCG GCACCATCCA ATTGCTGTGG
CGCGGCATCG CCGACTATCT GCAGCGCCAC CGGATCGGCC ATATGTTCGG TTGCGCGAGC
TTTCCCGGTA CCGACCCGGC CGAGCATGCC GAGGGCCTGT CGCTGCTCGC CCACAACCAC
ATGGCGGTGC CCGAGCTGCG CGCCCGCGCG ATCGGCGCGC ATGCCATCCC GCTCGGCCCG
CTGCCGCTTG GCGGCTATGA CCCGCGCATC GCCTCGCGCC GGCTGCCGCC GCTGATCAAG
GCCTATCTGC GGGTCGGCGC CGAGGTCGGC GACGGCGCCT ATATCGACCA CGCCTTCAAC
ACGATCGACG TGTTCGTGCT GATGCCCGTG GCCCGCATCG CCGCCCGCTA CGCCCAGCGC
TTCGAGGTCG CGGCGTAA
|
|---|
| Protein sequence | MMTQALDRVE RRLAVRLADG AADVVAAQRL RYDIFFRDMG ATPEPQAADA GQGRDVDPYD
MLCDHLLVED HARAGSPVVG TYRLLRQSVA EAHDGFYSAH EFDLSAVIAH GRREGVELLE
LGRSCVDPAY RDAGTIQLLW RGIADYLQRH RIGHMFGCAS FPGTDPAEHA EGLSLLAHNH
MAVPELRARA IGAHAIPLGP LPLGGYDPRI ASRRLPPLIK AYLRVGAEVG DGAYIDHAFN
TIDVFVLMPV ARIAARYAQR FEVAA
|
|---|
| |