| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2845 |
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| Symbol | trmE |
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| ID | 5197434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3125981 |
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| End bp | 3127303 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 640582396 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001263336 |
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| Protein GI | 148555754 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0598385 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGCCGG CACCCCTGGA AAATAGCCCC GGCGCTTCGG CGTCCGACAC GATCTTCGCG
CTGTCGAGCG GCGCTCCGCC GGCGGGGGTC GCGGTGGTGC GGATCAGCGG GCCGATGGCG
GGCGTGGCGA TCGACCGGCT GACCGGCAGC CGGCCGCGCC CCGCCGCGCG CCGCGCGAGC
CTGCGCGCCC TGACCAATCC CGATGGTGGC GCGCTGCTCG ACCGGGCGCT GCTGCTCTGG
CTGCCCGGTC CCGGCACCGC GACCGGCGAG GACATGGCCG AGCTTCACCT CCATGGCGGT
CGCGCGGTGA CGGCGGCGGT GCTCGCCGCG CTCGGCCGGC TGCCGGGCCT GCGCCCCGCT
ACGGCCGGCG AGTTCACCCG CCGCGCCTTC GAGACCGGGC GGATCGACCT CAACGAGGCC
GAGGCGCTCG CTGACCTGCT CGCCGCCGAG ACCGAGGCGC AGCGCCGCAA CGCGATGCTG
CTCGCGGGCG GGGCGCTCAG CCGCGCTCTG GAGGACTGGC AGCATCGCGT GCTGTCGCTG
GCCGCGCGGC TCGAGGCGCA GCTCGACTTT TCCGACGAGG AGGACGTTGC GCCGCTCGAT
CCCGGCTTCG CCGCCGAACT GGCCGCGCTC GATGCCGAGG TCGTGCGGTG GCGTGGGCGG
CTTCCCGTGG AACGACTCCG CGACGGCGTC CGGGTTGTGC TCGCGGGCCC GCCCAACGCT
GGCAAGTCGA CCCTGCTCAA TGCCTTGGCC GGGCGCGAGG CGGCGATCGT CACGCCGATC
GCCGGGACCA CGCGCGACCT GATCGAGGCG CCGGTGGCCT TGGGCGGCAT ACCTTTCCTG
CTCACCGACA CCGCCGGACT CCATGAGGGG ACAGGCGACG CGGTCGAGGC GATCGGCATC
GATCGGGCGG GCCAGGCCAT CGCCGCCGCC GACATCGTCC TCTGGCTCGG TGATCCCGGC
TGCGCCCCGG CGGGTTCGGT CCGGATCGGT GCCCAGGCCG ACCGTCGGAC GCACGACTCC
GCCGCGCACG ACCTGCTCGT CTCGGCGCGG AGCGGCACGG GGATGGACGA TCTCGTCGCG
CTGCTGCTCG ATCGTGCCGC GGGGCTGTTG CCGGGCGAGG GGGAGGCGGC GCTGTCGGCG
CGGCAGCGCG CGGCGCTCGA CCGGCTCGGC GAGGCGCTGG CGCTGGCGCG GGAGGAGGGT
GATCCGATCC TCGTCGCCGA GGGGTTGCGC CTCGCCCGCG CTGCGATCGA CGCGTTGACC
GGGCGCGCCG GGACCGAGGA TATGCTCGAC GGGCTGTTCG GCCGCTTCTG CATCGGCAAA
TGA
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| Protein sequence | MPPAPLENSP GASASDTIFA LSSGAPPAGV AVVRISGPMA GVAIDRLTGS RPRPAARRAS
LRALTNPDGG ALLDRALLLW LPGPGTATGE DMAELHLHGG RAVTAAVLAA LGRLPGLRPA
TAGEFTRRAF ETGRIDLNEA EALADLLAAE TEAQRRNAML LAGGALSRAL EDWQHRVLSL
AARLEAQLDF SDEEDVAPLD PGFAAELAAL DAEVVRWRGR LPVERLRDGV RVVLAGPPNA
GKSTLLNALA GREAAIVTPI AGTTRDLIEA PVALGGIPFL LTDTAGLHEG TGDAVEAIGI
DRAGQAIAAA DIVLWLGDPG CAPAGSVRIG AQADRRTHDS AAHDLLVSAR SGTGMDDLVA
LLLDRAAGLL PGEGEAALSA RQRAALDRLG EALALAREEG DPILVAEGLR LARAAIDALT
GRAGTEDMLD GLFGRFCIGK
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