| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2840 |
|---|
| Symbol | |
|---|
| ID | 5197484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3122246 |
|---|
| End bp | 3123304 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640582391 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001263331 |
|---|
| Protein GI | 148555749 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02595] PEP-CTERM putative exosortase interaction domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.884921 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0517555 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGGGT TCCGTGCTTT TCCGATCATC GTCGCCGGCC TGATGGCCGT CGCCCATGCG
GGGCAGGCGT CCGCCGCGCT GGTCGGCCAG TCGGTCTCGA CCGGCATCGC CGCGCTGAAG
GAATGGAACG TCGTCTCGTT CAACAACTTC ACCTCGTACA ACCATGTCGA CGGGCGCGTG
TTCGTGGGCG GCACCTTCAA TGCCGGCGGC AACTTCACCA TCCAGAACAA CAATATCCCG
TCGTCGAGCT ATGGCACCCC GGCGCTGACC GTGGTCGGCA GCGCCGCGCT CAACGGCAGC
GTCAACGCCG GCGGCGGCAT CAGTGTCGGC GGCAGCGTCA GCGGGTCGTT CAACAACAAT
GGCCAGAACG TGGTCACCTA TGGCGGCTCC AACAGCGCCT GGGCGAACAA CACCACCTTC
ACCCAGGGCG CGCCCGACTT CACCAGCACG CTGCAGAGCC AGTCGAACGA CATCAAGGCG
TCGCTGATCA GCCTCAGCCA GAATCTCGCC GCGCTCGGCA ACACCAGCGG CGTCAGCGTC
GGCGGCGACA GCAACAACCA GCAGATCACC GTGACCGGCA GCGGCTTGCA GGTGCTCAAC
TGGTCGGAAG CGATGTTCGA GGGCAGCAGC AACCAGCAGC TCCTGGTCAG CCTGCCGAGC
GACGCGACGC TGGTCATCAA CGTCGCCGGC ACCGACATCG ACTTCGATCG CAACTTCAAT
CGCTTCAGCG GCGACAACCG GGTGCTGTTC AACTTCTACG AGGCGACCAC GGTCGATATC
GGCCGCCAGT TCAGCGGCTC GATCCTCGGC GTCTTCGCCG ACATCACCGG CGGCAACAGC
GGCAATATCG ACGGCACGGT GATCGGCAAC AACGTCCGCC AGAATTCGAA CGGCGAGATC
CACAACAATT ATTTCCAGGG CGACCTGTCG AGCATCAACG GCCCTGTGTC GGTCGCGCCC
GAGCCGTCGA CCTGGGCGAT GCTGATCCTC GGCTTCGGCC TGGTCGGCGC GATGATGCGC
ACCCGCAATC GCCGGACCCT GGTGGTCCAG GCCGCCTGA
|
|---|
| Protein sequence | MRGFRAFPII VAGLMAVAHA GQASAALVGQ SVSTGIAALK EWNVVSFNNF TSYNHVDGRV
FVGGTFNAGG NFTIQNNNIP SSSYGTPALT VVGSAALNGS VNAGGGISVG GSVSGSFNNN
GQNVVTYGGS NSAWANNTTF TQGAPDFTST LQSQSNDIKA SLISLSQNLA ALGNTSGVSV
GGDSNNQQIT VTGSGLQVLN WSEAMFEGSS NQQLLVSLPS DATLVINVAG TDIDFDRNFN
RFSGDNRVLF NFYEATTVDI GRQFSGSILG VFADITGGNS GNIDGTVIGN NVRQNSNGEI
HNNYFQGDLS SINGPVSVAP EPSTWAMLIL GFGLVGAMMR TRNRRTLVVQ AA
|
|---|
| |