Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2830 |
Symbol | |
ID | 5199175 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3113248 |
End bp | 3114117 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640582381 |
Product | shikimate dehydrogenase |
Protein accession | YP_001263321 |
Protein GI | 148555739 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0523448 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAC TGCCTTTTGC GCCTGGTGCT TTCGCGGAAG TGATCGGCGA TCCGATCGGC CATTCGAAGT CGCCGACGAT CCACAAATTC TGGCTCGACC GGGCCGGAAT CCCAGCGGAC TATCGCGCGG CGCATGTGAA GCCCGAAGAC CTGTGGATCT ATTTCGAGGA ACGCCGCCGC GATCCCGCCT GGCGCGGCTG CAACGTCACC ATTCCGCACA AGCAGGCGGT GATGAAGCTC GTCGACCGGA TCGACCCCGC CGCCGAGCGG ATCGGCGCGG TCAACACGGT GATGCCGGAG GACGGCAAGC TGGTCGGCTA CAACACCGAC TATGCCGGAT TCCTGGAGCC GATCCGGCCG CTGCTCGCGC AGCAGCACCT GTTCCGCATG GCGCGGGTGT TCGGCACCGG CGGCGCGGCC AAGGCGGTGG TGCTCGCGCT CCACGACCAT GGCTTCACCA TCGTCGTCGC CGCCCGCGAC CTGGACAAGG CGCGGGCGCT GCGCGAGGCG TTCGAGCCCG ACGAGCGGCT GATCGCGCCG ATCGAGATCT TCGCCGACCC GACCGATTTC CCGTTCGACG ACCGCGAGGG CATCCTCGAC CTCGTCGTCA ATACCACCTC GCTCGGCATG AACGGGCAGC CGCCGCTCGC GCTCGACTTC AGCCATGTCC CGCCCGATGC GGTGATCTAC GACATCGTCT ACGCCCCGCT CGAGACTCCG CTGCTCGCCG AGGCGAAGCG CCACGGGCTG CGCACGATCG ACGGACTCCA CATGCTGATC GGCCAGGCGG CGGCGGCGTT CGAGCGATTC TATGGCCGGC CCGCGCCGCG CGACGCCGAC GATGCGTTGC GCGCGTTGCT GGTCGCCTGA
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Protein sequence | MSELPFAPGA FAEVIGDPIG HSKSPTIHKF WLDRAGIPAD YRAAHVKPED LWIYFEERRR DPAWRGCNVT IPHKQAVMKL VDRIDPAAER IGAVNTVMPE DGKLVGYNTD YAGFLEPIRP LLAQQHLFRM ARVFGTGGAA KAVVLALHDH GFTIVVAARD LDKARALREA FEPDERLIAP IEIFADPTDF PFDDREGILD LVVNTTSLGM NGQPPLALDF SHVPPDAVIY DIVYAPLETP LLAEAKRHGL RTIDGLHMLI GQAAAAFERF YGRPAPRDAD DALRALLVA
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