Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2817 |
Symbol | |
ID | 5196453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3104181 |
End bp | 3106310 |
Gene Length | 2130 bp |
Protein Length | 709 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640582368 |
Product | 1A family penicillin-binding protein |
Protein accession | YP_001263308 |
Protein GI | 148555726 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.515125 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.127975 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGACCA AACCAAACCC CAGGAAAAAG CCTAGCCGCA TGGGCTGGCT CCGCACCCTC TTCAAGATCG GCCTCTTCAC CGCGCTCGCC GGCCTCGGCG CGCTGGTGAT CGCGGTGCTG ATCGCGATGG CCTCGCTGCC CGGCTTCGAG GAGCTGAAGT CGAGCCCGAA CGGGCAGACG GTGCGCGTCC GCGCCGCCGA CGGATCGGTG ATCGTCGCGC TCGGGCCGAG CTATGGCGAC TGGCTGCCGA TCGCGCAGAT CCCCGATCCG ATGAAGAAGG CGATGGTCGC GGTCGAGGAC CGGCGCTTCT ACATGCACCC GGGCATCGAC CCGATCGGCA TGGCGCGCGC CGCCTGGGTG GGCATCCAGC GCAAGGGGGA GGGCCGCCGC CTGCAGGGCG CGTCGACGAT CACCCAGCAG CTCGCCCGCA ACATCTTCCT GACCAACGCC TACAGCTTCG GCCGCAAGTT CCGCGAGGTG ATCCTGGCGC TGGCGATCGA GCGCAAATTC TCGAAGGAGC AGATCCTCGA GCTCTATCTC AACCGCGTCT ATTTCGGCGG CGGCGCCTAT GGCATCGACG CCGCGGCGCG CAAATTCTTC GACCATTCGG CGACCACGCT GAACCTGGGC GAGAGCGCGA TCATCGCCGG GCTGGTCAAG GCGCCGTCGC ATTATTCGCC GACCGCCGAC CGCGAGGCCG CGATCGACCG CGCCAAGGTG GTGCTGGAGG TGATGCAGGA CGCGGGCGCG ATCACCCCGT CCGAGGCCGG GGCGATCGAC CTCGATAAGG TCCGCCTCGC CCCCGAGCGG GACCAGAACG CGGTGCGCTA CTTCACCGAC TGGGCGCTCG CCCAGCTCGA CGACCTGGTC GACGAGCAGG TCCAGCCGAT CGACGTGTGG ACGACGATCG ACCCGGTGAT GCAGAAGGCC GCCGACGCCG CGATCCGCGC CAACGCCCCG CCCGGCGCGC AAGGCGCGCT CGTCGCGCTC GACCGCGACG GCGCGGTCCG CGCGATGGTC GGCGGACGCG ACTATGTCAG CTCGATCTAC AACCGCGCGA CCCAGGCGGA GCGGCAACCC GGCTCCGCCT TCAAATTGTT CGTCTACCTG GCGGCGATGG AGGCGGGGAT GAAGCCCGAC ACGCCCGTCA CCGACGAGCC GATCGACATC GGCGGCTGGA GCCCGCGCAA CAGCAACCGC GAATATGCCG GCGCGATCGA CATCCGCACC GCCTTCGCCT TCTCGGTCAA CACCGTCGCC GCCAAGATCG GCCAGCAGGT CGGCTTCGAC ACCGTCGCCG ACATGGCCCA CCGCTTCGGC ATCGGCACCA AGCTCAACAC CCATCCGTCG ATGGTGCTCG GCACGTCCGA CGTCCGGCTG ATCGACATGA CCCGCGCCTT CGCGGCGGTC GCGCGCAAGG GCGTCGCCGT CGTCCCCTAC GGCATCGTCA AGGTGACGAC CGCCAAGGGC GACCTGCTCT ACGAGCATCG CGCCGACGAC AATCGCGTGC TGGTCGCCCC CTGGGTCGCC GCCGAGGTGA CCGATCTCCT CCAGACCGCG GTCAATACCG GCACCGCGCG CGCCGCGCAG ATCGGCCGGC CGGTCGCGGG CAAGACCGGC ACCACTTCCT CGAACAAGGA CGGCTGGTTC CTCGGCTTCT CCTCCGGCAT CACCGCCGGA GTGTGGATGG GCCGCGACGA CGCCAAGACC GTCGGCGGCC TGCAGGGCGG CCGCGCGCCC GCGCGCGCCT TCGCCGATTT CATGCGGGTC GCGGTCGCCA AGCGCCCGGC CGAGCCGTTC GAGACGCAGG TGACCCTGCC CGAATTCCAG ATCGAGCCCG ACGACGAGGC CTTCTTCGGC GCCCCCGACG ACAGCTTCAC CAACCCGGAG GGCCTGCCCG CCGACCAGGG CATCGAGCCG CAGGCCGACC CCGAGGACGG CTTCGAGCCC CAGGCCGCGG CACCCACGGG CCCGGCGGCG GCACCCCCAC GCGTCCAGCC CGGCCCGCCG CCCGCCGCCC AGCCGCGTGC CCAGCCGGCG CAACAGCAGC AGCAACGCCC GTCGCTCGGC TCGGATTTCC TGAGCGGCAT CGACCAGCCC CGCCGCAACG CCGACCGGCC GCGGCCCTGA
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Protein sequence | MSTKPNPRKK PSRMGWLRTL FKIGLFTALA GLGALVIAVL IAMASLPGFE ELKSSPNGQT VRVRAADGSV IVALGPSYGD WLPIAQIPDP MKKAMVAVED RRFYMHPGID PIGMARAAWV GIQRKGEGRR LQGASTITQQ LARNIFLTNA YSFGRKFREV ILALAIERKF SKEQILELYL NRVYFGGGAY GIDAAARKFF DHSATTLNLG ESAIIAGLVK APSHYSPTAD REAAIDRAKV VLEVMQDAGA ITPSEAGAID LDKVRLAPER DQNAVRYFTD WALAQLDDLV DEQVQPIDVW TTIDPVMQKA ADAAIRANAP PGAQGALVAL DRDGAVRAMV GGRDYVSSIY NRATQAERQP GSAFKLFVYL AAMEAGMKPD TPVTDEPIDI GGWSPRNSNR EYAGAIDIRT AFAFSVNTVA AKIGQQVGFD TVADMAHRFG IGTKLNTHPS MVLGTSDVRL IDMTRAFAAV ARKGVAVVPY GIVKVTTAKG DLLYEHRADD NRVLVAPWVA AEVTDLLQTA VNTGTARAAQ IGRPVAGKTG TTSSNKDGWF LGFSSGITAG VWMGRDDAKT VGGLQGGRAP ARAFADFMRV AVAKRPAEPF ETQVTLPEFQ IEPDDEAFFG APDDSFTNPE GLPADQGIEP QADPEDGFEP QAAAPTGPAA APPRVQPGPP PAAQPRAQPA QQQQQRPSLG SDFLSGIDQP RRNADRPRP
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