Gene Swit_2817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2817 
Symbol 
ID5196453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp3104181 
End bp3106310 
Gene Length2130 bp 
Protein Length709 aa 
Translation table11 
GC content71% 
IMG OID640582368 
Product1A family penicillin-binding protein 
Protein accessionYP_001263308 
Protein GI148555726 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.515125 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.127975 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGACCA AACCAAACCC CAGGAAAAAG CCTAGCCGCA TGGGCTGGCT CCGCACCCTC 
TTCAAGATCG GCCTCTTCAC CGCGCTCGCC GGCCTCGGCG CGCTGGTGAT CGCGGTGCTG
ATCGCGATGG CCTCGCTGCC CGGCTTCGAG GAGCTGAAGT CGAGCCCGAA CGGGCAGACG
GTGCGCGTCC GCGCCGCCGA CGGATCGGTG ATCGTCGCGC TCGGGCCGAG CTATGGCGAC
TGGCTGCCGA TCGCGCAGAT CCCCGATCCG ATGAAGAAGG CGATGGTCGC GGTCGAGGAC
CGGCGCTTCT ACATGCACCC GGGCATCGAC CCGATCGGCA TGGCGCGCGC CGCCTGGGTG
GGCATCCAGC GCAAGGGGGA GGGCCGCCGC CTGCAGGGCG CGTCGACGAT CACCCAGCAG
CTCGCCCGCA ACATCTTCCT GACCAACGCC TACAGCTTCG GCCGCAAGTT CCGCGAGGTG
ATCCTGGCGC TGGCGATCGA GCGCAAATTC TCGAAGGAGC AGATCCTCGA GCTCTATCTC
AACCGCGTCT ATTTCGGCGG CGGCGCCTAT GGCATCGACG CCGCGGCGCG CAAATTCTTC
GACCATTCGG CGACCACGCT GAACCTGGGC GAGAGCGCGA TCATCGCCGG GCTGGTCAAG
GCGCCGTCGC ATTATTCGCC GACCGCCGAC CGCGAGGCCG CGATCGACCG CGCCAAGGTG
GTGCTGGAGG TGATGCAGGA CGCGGGCGCG ATCACCCCGT CCGAGGCCGG GGCGATCGAC
CTCGATAAGG TCCGCCTCGC CCCCGAGCGG GACCAGAACG CGGTGCGCTA CTTCACCGAC
TGGGCGCTCG CCCAGCTCGA CGACCTGGTC GACGAGCAGG TCCAGCCGAT CGACGTGTGG
ACGACGATCG ACCCGGTGAT GCAGAAGGCC GCCGACGCCG CGATCCGCGC CAACGCCCCG
CCCGGCGCGC AAGGCGCGCT CGTCGCGCTC GACCGCGACG GCGCGGTCCG CGCGATGGTC
GGCGGACGCG ACTATGTCAG CTCGATCTAC AACCGCGCGA CCCAGGCGGA GCGGCAACCC
GGCTCCGCCT TCAAATTGTT CGTCTACCTG GCGGCGATGG AGGCGGGGAT GAAGCCCGAC
ACGCCCGTCA CCGACGAGCC GATCGACATC GGCGGCTGGA GCCCGCGCAA CAGCAACCGC
GAATATGCCG GCGCGATCGA CATCCGCACC GCCTTCGCCT TCTCGGTCAA CACCGTCGCC
GCCAAGATCG GCCAGCAGGT CGGCTTCGAC ACCGTCGCCG ACATGGCCCA CCGCTTCGGC
ATCGGCACCA AGCTCAACAC CCATCCGTCG ATGGTGCTCG GCACGTCCGA CGTCCGGCTG
ATCGACATGA CCCGCGCCTT CGCGGCGGTC GCGCGCAAGG GCGTCGCCGT CGTCCCCTAC
GGCATCGTCA AGGTGACGAC CGCCAAGGGC GACCTGCTCT ACGAGCATCG CGCCGACGAC
AATCGCGTGC TGGTCGCCCC CTGGGTCGCC GCCGAGGTGA CCGATCTCCT CCAGACCGCG
GTCAATACCG GCACCGCGCG CGCCGCGCAG ATCGGCCGGC CGGTCGCGGG CAAGACCGGC
ACCACTTCCT CGAACAAGGA CGGCTGGTTC CTCGGCTTCT CCTCCGGCAT CACCGCCGGA
GTGTGGATGG GCCGCGACGA CGCCAAGACC GTCGGCGGCC TGCAGGGCGG CCGCGCGCCC
GCGCGCGCCT TCGCCGATTT CATGCGGGTC GCGGTCGCCA AGCGCCCGGC CGAGCCGTTC
GAGACGCAGG TGACCCTGCC CGAATTCCAG ATCGAGCCCG ACGACGAGGC CTTCTTCGGC
GCCCCCGACG ACAGCTTCAC CAACCCGGAG GGCCTGCCCG CCGACCAGGG CATCGAGCCG
CAGGCCGACC CCGAGGACGG CTTCGAGCCC CAGGCCGCGG CACCCACGGG CCCGGCGGCG
GCACCCCCAC GCGTCCAGCC CGGCCCGCCG CCCGCCGCCC AGCCGCGTGC CCAGCCGGCG
CAACAGCAGC AGCAACGCCC GTCGCTCGGC TCGGATTTCC TGAGCGGCAT CGACCAGCCC
CGCCGCAACG CCGACCGGCC GCGGCCCTGA
 
Protein sequence
MSTKPNPRKK PSRMGWLRTL FKIGLFTALA GLGALVIAVL IAMASLPGFE ELKSSPNGQT 
VRVRAADGSV IVALGPSYGD WLPIAQIPDP MKKAMVAVED RRFYMHPGID PIGMARAAWV
GIQRKGEGRR LQGASTITQQ LARNIFLTNA YSFGRKFREV ILALAIERKF SKEQILELYL
NRVYFGGGAY GIDAAARKFF DHSATTLNLG ESAIIAGLVK APSHYSPTAD REAAIDRAKV
VLEVMQDAGA ITPSEAGAID LDKVRLAPER DQNAVRYFTD WALAQLDDLV DEQVQPIDVW
TTIDPVMQKA ADAAIRANAP PGAQGALVAL DRDGAVRAMV GGRDYVSSIY NRATQAERQP
GSAFKLFVYL AAMEAGMKPD TPVTDEPIDI GGWSPRNSNR EYAGAIDIRT AFAFSVNTVA
AKIGQQVGFD TVADMAHRFG IGTKLNTHPS MVLGTSDVRL IDMTRAFAAV ARKGVAVVPY
GIVKVTTAKG DLLYEHRADD NRVLVAPWVA AEVTDLLQTA VNTGTARAAQ IGRPVAGKTG
TTSSNKDGWF LGFSSGITAG VWMGRDDAKT VGGLQGGRAP ARAFADFMRV AVAKRPAEPF
ETQVTLPEFQ IEPDDEAFFG APDDSFTNPE GLPADQGIEP QADPEDGFEP QAAAPTGPAA
APPRVQPGPP PAAQPRAQPA QQQQQRPSLG SDFLSGIDQP RRNADRPRP