| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2792 |
|---|
| Symbol | |
|---|
| ID | 5196862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3079951 |
|---|
| End bp | 3082356 |
|---|
| Gene Length | 2406 bp |
|---|
| Protein Length | 801 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640582344 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001263284 |
|---|
| Protein GI | 148555702 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.536438 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC TCCCCCCACC CCTCGCCGGC TGGTTCGCGG CCAAGGGCTG GGCGCCGCGC
CGTCACCAGA TGGCGATGCT CGCCGCCGCC CGCGCCGGGC GGGACGCGCT GCTCGTCGCG
CCGACCGGGT CGGGCAAGAC GCTCGCCGGC TTCCTCCCCA CGCTGGTCGA ACTGGTCGAG
GAACCGCGCG AGGGGCTCCA CACCCTCTAT GTCTCGCCGC TGAAGGCGCT CGCGGTCGAC
GTCCGCCGCA ACCTGCTGAC CCCGATCGAG GAGATGGGGC TCGACATCCG GGTCGAGACG
CGGACGGGCG ACACCCCGTC CGACCGCAAG GCGCGGCAGC GGGCGAAGCC GCCGCAGATA
TTGCTCACCA CCCCCGAATC GCTCAGCCTG CTGCTCTCCT ATCCCGACAG CGCGGCGCTG
TTCGCGGGGC TCAGGACGGT GGTGATCGAC GAGGTCCACG CCTTCGCCAC CACCAAGCGC
GGCGACCTGC TGGCGCTGTC GCTCGCCCGG CTCGGCAGCC TCGCCCCCGA TCTGCGCCGG
GTCGCGCTGT CGGCGACGAT CGCCGATGTC GACGCCTATC GCGGCTGGCT GTCGGGCGAC
GGCGACTATG AAGCGGTGGC GCTGGTCGAG GGCGATCCCG GCGCGCCGCC CCGCATCGAC
ATGCTGATCC CCGAGGGGCG CATCCCCTGG GCCGGCCATT CGGGGCGCTA CGCCGCCGAG
CAGGTGATGG CCGAGATCGA GACCCACGGC ACGACGATCA TCTTCTGCAA CACCCGCAGC
CTCGCCGAGC TGATCTTCCA GGACCTGTGG AAGGTCAACG CGATGAGCCT GCCGATCGGC
ATCCACCACG GATCGCTGTC GCGCGAGGCC CGGCGCAAGG TCGAGGAGGC GATGGCGGCC
GGGCGGCTGC GCGCGCTGGT CGCGACCGCC AGCCTCGACC TCGGCGTCGA CTGGGGCGAC
GTCGACCTCG TCATCCAGAT GGGCGCGCCC AAGGGCGCCT CGCGCCTGCT CCAGCGGATC
GGCCGCGCCA ACCACCGGCT CGACGAGCCG AGCGAGGCGG TGATCGTCCC CGGCAACCGC
TTCGAATATC TGGAAGGCCG CGCCGCGCTC GACGCGATCG CGGCGGGCGA GCTCGACAAC
GAGCCGTTCC GTCCCGGCAG CATCGACGTG CTCGCCCAGC ATGTGCTGGC GATCGCCTGC
GCCGGGCCGT TCCGCGCCGA GGAGCTGCTC GCCGAGGTCA ACCGCGCCGC GCCCTATGCG
ACGCTGACCG CCGCGCGGTT CGACCGGGTG CTCGGCTATA TCGCCAATGG CGGCTATGCG
CTGAAGGCCT ATGACAAATT CCGCCGCCTC GCCCGCACCC CGGACGGGCA GTGGCGGCTC
AGCCACCCCG ATTTCGCCGC CCGGCACCGG CTCAACGCCG GGATCATCGT CGAGGCGCCG
ATGCTCGACG TGCGCTTCCG CAACGGCCGC AGCCTCGGCA AGGTGGAGGA GGGGTTCGGC
ACCACCTTGT CGCCGGGCGA CTGCTTCTTC TTCATGGGCA TGGCGCTCGA GGTGCAGAAG
ATCGACCTCA CCGACCTGAT CGTCCGCGCC ACCTCCAAGC CCGCGCGCAT CCCCACCTAT
GGCGGCGCGC GCATGCCGAT CTCGACCCAC CTCGCCGACC GGGTGCGCGC CTATCTCCAC
GATCCGTCGC AATGGCCGCG CTTCCCCGAC GACGTCCGCG AATGGCTGGA GATGCAGGAC
CGCCGATCGC GCCTGCCCGC GCCCGACGAG CTGCTGGTCG AGACCTTCCC GCACGAGAAG
CGCCATTACA TGGTGATCTA CAGCTTCGAG GGCTGGAACG CGCACCAGTC GCTCGGCATG
CTGCTGACCC GGCGGATGGA GAGCCAGGGC CTCTCCCCGC TCGGCTTCGT CTCCTCCGAC
TATGCGCTCG CCTGCTATTC GATCGAGCCG GTGACCGACC CCGCCAGCCT GTTCTCGCCC
GAGATATTGG AGGAGGAGTT CGTCGACTGG GTCGAGGGAT CGGCGCTGCT CAAGCGCGCC
TTCCGCGAGG TGGCGGTGAT CGGCGGCCTC GTCGAGCGCC AGCATCCCGG CAAGAAGAAG
TCGGGCCGGC AGGTCACCTT CTCGACCGAC CTGATCTACG ACGTGTTGCG CCGCTACGAG
CCCGACCATC TGCTGCTCGA CGCCGCCTGG GCCGATGCGC GCGCGAAGAT GACTGATGTC
GGCCGGCTCG GCGCGCTGAT CGAGCGCGCC GCCGAGCGCA TCGTCCATGT CGCCCTCGAC
CGCGTCTCCC CGCTCGCGGT GCCGGTGCTG GTGCTGATCG GCCGCGAGAC GGTGGCCCAG
GGCCTTGCCG ACGACGTGCT GCTGATCGAG GCCGACGCCC TCGCGGCGGA GGCGATGCGG
GAATAG
|
|---|
| Protein sequence | MTDLPPPLAG WFAAKGWAPR RHQMAMLAAA RAGRDALLVA PTGSGKTLAG FLPTLVELVE
EPREGLHTLY VSPLKALAVD VRRNLLTPIE EMGLDIRVET RTGDTPSDRK ARQRAKPPQI
LLTTPESLSL LLSYPDSAAL FAGLRTVVID EVHAFATTKR GDLLALSLAR LGSLAPDLRR
VALSATIADV DAYRGWLSGD GDYEAVALVE GDPGAPPRID MLIPEGRIPW AGHSGRYAAE
QVMAEIETHG TTIIFCNTRS LAELIFQDLW KVNAMSLPIG IHHGSLSREA RRKVEEAMAA
GRLRALVATA SLDLGVDWGD VDLVIQMGAP KGASRLLQRI GRANHRLDEP SEAVIVPGNR
FEYLEGRAAL DAIAAGELDN EPFRPGSIDV LAQHVLAIAC AGPFRAEELL AEVNRAAPYA
TLTAARFDRV LGYIANGGYA LKAYDKFRRL ARTPDGQWRL SHPDFAARHR LNAGIIVEAP
MLDVRFRNGR SLGKVEEGFG TTLSPGDCFF FMGMALEVQK IDLTDLIVRA TSKPARIPTY
GGARMPISTH LADRVRAYLH DPSQWPRFPD DVREWLEMQD RRSRLPAPDE LLVETFPHEK
RHYMVIYSFE GWNAHQSLGM LLTRRMESQG LSPLGFVSSD YALACYSIEP VTDPASLFSP
EILEEEFVDW VEGSALLKRA FREVAVIGGL VERQHPGKKK SGRQVTFSTD LIYDVLRRYE
PDHLLLDAAW ADARAKMTDV GRLGALIERA AERIVHVALD RVSPLAVPVL VLIGRETVAQ
GLADDVLLIE ADALAAEAMR E
|
|---|
| |