Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2580 |
Symbol | |
ID | 5197622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2863888 |
End bp | 2864496 |
Gene Length | 609 bp |
Protein Length | 202 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 640582136 |
Product | hypothetical protein |
Protein accession | YP_001263076 |
Protein GI | 148555494 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4795] Type II secretory pathway, component PulJ |
TIGRFAM ID | [TIGR01711] general secretion pathway protein J [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.214724 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGGCG GCCCGCAGGA GATCGGGTGT CCCGTGACCG TGGATTCCCG CTTTCGCGGG AATGACGAAG AGGGACGTGA AGCCGGCTTC ACCCTGATCG AGCTGATGAT CTCGCTCGCG CTGTTCGGGT TGATCGCGCT CGCGGGACTG GCGCTGGTCG ACAGCCTGAT GGGTATCCGC GACCGCACCG AGGGCCGGCT CGACCGCCTC GCCGAGGTGC AGCGGGCGAT GTACGTGATC GACAACGACC TGACCCAGAT CAGCCCCGGC CCGCTCCAGG GCGACGCCGC GACCGTGCGC TTCAGCCGCC CGCTGGCGGC GGCGGGTGGG CTGCCGGTGC GGATCGACTA TCAGCTCGGC GCCGGCACGC TGCTGCGCGG GGTGCGCGGG CGCGGCCTGC CGCAGGGGGC GCAGCGCATG CTCCAGGGCG TCGCGGCGGT GCGCTGGAGC TATTACCGGC CGGGCGAGGG CTGGGTCGAC CGCTGGCCGC CCGCGCCCGA GCTGGCCAAC CAATGGCCCG CCGCCGTCGC CGCCGACATC GCGCTGGCGC CGGGCGGCAC GGTCGGCGGA TCGCTGCGGC GGGTCGTGCC GCTGCCGGTC CATCCGTGA
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Protein sequence | MEGGPQEIGC PVTVDSRFRG NDEEGREAGF TLIELMISLA LFGLIALAGL ALVDSLMGIR DRTEGRLDRL AEVQRAMYVI DNDLTQISPG PLQGDAATVR FSRPLAAAGG LPVRIDYQLG AGTLLRGVRG RGLPQGAQRM LQGVAAVRWS YYRPGEGWVD RWPPAPELAN QWPAAVAADI ALAPGGTVGG SLRRVVPLPV HP
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