| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2575 |
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| Symbol | |
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| ID | 5196361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 2854644 |
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| End bp | 2857337 |
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| Gene Length | 2694 bp |
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| Protein Length | 897 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640582131 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001263071 |
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| Protein GI | 148555489 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.118608 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAACC CTCTCGCCTT CGGGCGCATC CTCCTGCTTT CGACGGCGCT GATGTCGCCG
GCCGCGCTGC TCGCGCAGGC CGCCGCGCCG GCTCCCGCCG ACCAGCCCGC CGACCGGTCG
TCCGCCGACA AGGGCGAGGA GCAGGTCGAG ATCTCGACGC TCGGCGCGCC CTCGGCCCGC
GACATCGTCG TCACCGGCCG CCGCCAGCAG AACGTCGTCC GCGCGACCCC GCAGGTCGTC
TCGGTGCTCT CCTCGGCCGA CATCGCCCGC ACCGGCGACG GCGACATCGC CGGCGCGCTC
CAGCGCGTCA CCGGCCTGTC GGTGGTCGGC AACGGCTTCG TCTATGTCCG CGGCCTCGGC
GACCGCTACT CGCTGGCGCT GCTCAACGGC TCGCCGCTGC CGAGCCCCGA GCCGCTCAAG
CGCGTCGTCC CGCTCGACCT GTTCCCGACC AGCATCCTCG CCTCCTCGCT CGTCCAGAAG
AGCTATTCGG CCAATTATCC GGGCGAGTTC GGCGGCGGCG TGATCAACCT GACGACCAAG
GCGATCCCGA CCGAGACCTT CCTGTCGATC GGCGGATCGA TCGCCGGCGA CAGCGAGACG
ACCGGCAATC TCGGCTACAC CTATTACGGG TCGGACTATG ACTGGTTCGG CTTCGACGAC
GGCACCCGCG ACATCCCCAA GGGGCTGAAG TCCGCGATCA GGAATTCGGG CACCACCCCG
ATCGTCCAGG GCGCGACCTA CAGCGCGCAG GACCTGCAGG GCTTCGCCGC CAGCCTGAAC
AATGCGGACA CCGCGCTGCT CCAGCGCAAC CGCAACATCC CGGCCAATTT CTCGGCCGAC
CTGACCGGCG GCACCTCGTT CGACACCGAC AGCGGCCGGG TCGGCGTCCT CGCCGCCTTC
GGCTACAGCA ACAGCTGGCG GACCCGCGAC GTGCTCCAGC AGTCGTCGAT CGACCCGGAC
CTGGCCGGCA TCCCGCAGAC CCAGTTCCAG ACCGTCATCA CCGACAACCA CGTCACGGTG
AACGGCCTGC TCGGCCTCGG CGCCGAGGTG AACGACCACA AGTTCCGCTG GACCAACCTG
TTCATCCGCG ACACCGTCAA GCAGGGCCGC CTGTCGGCCG GCTACAACCG CAGCGTCGAG
GACCAGGACG CGACCTTGCC GCCGTCGCTG CTCAAGCAGA ACACCTACTG GTTCGAGCGC
CAGCTGATCG ACACCCAGGG CGTCGCCGAG CTGCGCTTCG ACAAGCTCAG CATCGACCTG
CGCGGCACCT ATGCCAATTC GCAGCGCGAG AGCCCCTATG AGCGCAGCTT CAGCTATAAT
TACAGCCCGG TCGTCGGCGA CTACGTCAAC AACCTGACGT CGGCCGGCCA GTCGGCCGAC
ATCGCCTTCA GCGACCTCAA CGAGGATGTC TACGCGGGCA GCGCCGACAT CGGCTACACG
CTCGACGGCG CGCTCAAGGG CACGCTGACC GCCGGCTATG CCTATAACAA GACGAAGCGG
TCGTCCGAGC GCTACCAGTT CCAGTTCTTC CGCCCGACCG GCGCGCTGAA CCAGGGCGTC
GCGCAGGAGC GGCCGGACTT CCTGCTGTCC GACTATAATA TCTACACCTA CAACATCCAG
CTCCGCGACG TGTCGGGCGC CGAAGGGTCG CGCGCCTATG ACGCGGATCT CGTGATCCAT
GCGGGCTACG GCCAGGCGGA GATCGAGCTG GGCGACGGCC TGCGCATCCA GGGCGGCGTC
CGCTACGAGG ACGCGAAGCA GACCGTCACC CCCGACGCCG GATCGGGCAC CAACATCTCG
AAGAGCTATT TCCTGCCGGC GCTGACGCTG ACCTATAATT TCAACGACGA CATGCAGGTC
CGCATCGCCG GATCGAAGAC CGTCGCCCGT CCGCAGTTCC GCGAGCTGGC GCGCCAGATC
TACCAGGACT TCGAGAGCGA TCGCCAGTTC ACCGGCAACC CGTTCCTGAC CGATTCGAAG
CTGACCAATG CCGAGGCGCG CTGGGAGTGG TATTTCGACC GCAACCAGCG GCTGTCGCTG
GCGGGCTTCT ACAAGAAGAT CGACAATCCG ATCGAGGCGT CGGCCTTCTT CGCGGGCGGC
GGCGTGCTCC GCACCGGCTT CGCCAACGCG CCCGAGGCGC AGCTCTACGG CGCCGAGATC
GAGGCCGAGA AGCACTTCCC GCTCGACGGC CTCGGCGGCG AGTTCTTCGC CAGCAAGCGG
CTGGTGATGA TCGCCAACTA CACCTGGACC AAGTCGAAGC TGAAGGTCGA TGACTCGATC
GTGATCGGGC CGGACCTGTC GCCGGTCGCC GCCAACACGC TGTTCCGCGA CGGCGCGCCG
CTGACCGGCC AGTCGGACCA CATCGCCAAC CTCCAGCTCA GCTTCGAGGA TACCGAGCGC
CTGTCGCAGA TCACGATGCT GCTCAACTAT GCGAGCGACC GCGTGACCAA CCGCGGCCCG
ATCCAGGGCA CGCTGCGCCA GCCCGACATC GTCGAGAAGC CGGGCTTCCG GCTCGACCTG
GTCGGCCGCC AGGGCTTCAA GCTGCTCGGC ACCGACATGG AGCTGAAGCT CGAGGCGCGC
AACCTGACCG GGACCCCCTA CAAGGAGTTC CAGAAGACCG GTTCGAACAC CATCTACCTG
AACCGCTACA AGGTCGGCCG CAGCTTCTCG CTGGGCCTGA CCGCGAACTT CTGA
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| Protein sequence | MNNPLAFGRI LLLSTALMSP AALLAQAAAP APADQPADRS SADKGEEQVE ISTLGAPSAR
DIVVTGRRQQ NVVRATPQVV SVLSSADIAR TGDGDIAGAL QRVTGLSVVG NGFVYVRGLG
DRYSLALLNG SPLPSPEPLK RVVPLDLFPT SILASSLVQK SYSANYPGEF GGGVINLTTK
AIPTETFLSI GGSIAGDSET TGNLGYTYYG SDYDWFGFDD GTRDIPKGLK SAIRNSGTTP
IVQGATYSAQ DLQGFAASLN NADTALLQRN RNIPANFSAD LTGGTSFDTD SGRVGVLAAF
GYSNSWRTRD VLQQSSIDPD LAGIPQTQFQ TVITDNHVTV NGLLGLGAEV NDHKFRWTNL
FIRDTVKQGR LSAGYNRSVE DQDATLPPSL LKQNTYWFER QLIDTQGVAE LRFDKLSIDL
RGTYANSQRE SPYERSFSYN YSPVVGDYVN NLTSAGQSAD IAFSDLNEDV YAGSADIGYT
LDGALKGTLT AGYAYNKTKR SSERYQFQFF RPTGALNQGV AQERPDFLLS DYNIYTYNIQ
LRDVSGAEGS RAYDADLVIH AGYGQAEIEL GDGLRIQGGV RYEDAKQTVT PDAGSGTNIS
KSYFLPALTL TYNFNDDMQV RIAGSKTVAR PQFRELARQI YQDFESDRQF TGNPFLTDSK
LTNAEARWEW YFDRNQRLSL AGFYKKIDNP IEASAFFAGG GVLRTGFANA PEAQLYGAEI
EAEKHFPLDG LGGEFFASKR LVMIANYTWT KSKLKVDDSI VIGPDLSPVA ANTLFRDGAP
LTGQSDHIAN LQLSFEDTER LSQITMLLNY ASDRVTNRGP IQGTLRQPDI VEKPGFRLDL
VGRQGFKLLG TDMELKLEAR NLTGTPYKEF QKTGSNTIYL NRYKVGRSFS LGLTANF
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