Gene Swit_2562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2562 
Symbol 
ID5200819 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2843831 
End bp2844370 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content65% 
IMG OID640582118 
Producttranscription antitermination protein nusG 
Protein accessionYP_001263058 
Protein GI148555476 
COG category[K] Transcription 
COG ID[COG0250] Transcription antiterminator 
TIGRFAM ID[TIGR00922] transcription termination/antitermination factor NusG 


Plasmid Coverage information

Num covering plasmid clones48 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0500837 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCGCT GGTACATCAT TCACGCCTAT TCGGGCTTCG AGAACAAGGT CCGGGAAGCG 
ATCCTGGCCG ATGCCGCGCG CCTGGGCCTG GAGCAGCTCG TCGAGGCCGT CGAGGTCCCC
ACCGAGAAGG TCACCGAAGT CCGGCGCGGC AAGAAGATCA CGTCGGACCG CAAATTCTTC
CCCGGCTATG TGCTGGCGAA GCTCAGCATG AACGACGACG TCTACCACCT GGTGAAGAAC
ACGCCGAAGG TGACGGGCTT CCTCGGTTCG TCGGGCAAGC CGCAGCCGAT CAGCGAGGCC
GAGGCCGCGC GCATCCTCAA CACCAAGGAG GAGGCCGCCG CCGCCGCGCC CAAGACCAAG
CTCAAGGTCG ATTACGAGAT CGGCGACCAG GTCAAGGTGC TCGACGGTCC GTTCGCCAGC
TTCAACGGCG TCGTCGAGGA GCTCGACTTC GACCGCAGCC GCGTCAAGGT GTCGGTGTCG
ATCTTCGGCC GCGCGACCCC GGTCGAGCTC GAGTTCGAGC AGGTCGAGCG AGTCAAGTGA
 
Protein sequence
MARWYIIHAY SGFENKVREA ILADAARLGL EQLVEAVEVP TEKVTEVRRG KKITSDRKFF 
PGYVLAKLSM NDDVYHLVKN TPKVTGFLGS SGKPQPISEA EAARILNTKE EAAAAAPKTK
LKVDYEIGDQ VKVLDGPFAS FNGVVEELDF DRSRVKVSVS IFGRATPVEL EFEQVERVK