Gene Swit_2557 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2557 
Symbol 
ID5196563 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2839420 
End bp2840016 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content69% 
IMG OID640582112 
Productcold-shock DNA-binding protein family protein 
Protein accessionYP_001263053 
Protein GI148555471 
COG category[K] Transcription 
COG ID[COG1278] Cold shock proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.557959 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.17098 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGAGA AGTCTGTTGC GTCTGTAACG TTGCGCGACG TCAGCGTGGA CAGCGGGCAG 
GAATGCGTGT CGCCGGCTGC CGGCGAACCC GCCGAGACCG TCGTGGGCGC GGTGAAATGG
TTCGACGCCA CCCGCGGGTT CGGTTTCATC GCCACCGATG GTGATCGCGG CGACGTGCTC
GTCCATTTTT CCGTGCTGCG CGACCATGGC CGCCGGACCC TGCCCGAAGG CGCGCGCATC
GCGTGCGAGG TGGTGGCGCG CGACCGCGGC CTGCAGGCGC GCCGCATCCT CGCGATCGAC
CTGTCGACCG CGACCGGCCC CGATCCCGAC CTGATCGCCA AGCGCAACGC CGACCGCGTC
GATCCGACCC AGCTGGTCGA CCAGGCGGGC GAGCCCGAGC CGGTCATCGT CAAATGGTTC
AACCGCCTGA AGGGCTATGG CTTCCTCGTC CGCGACGGCG AGACCCAGGA CATCTTCATC
CATATGGAGA CGGTCCGCCG CGCCGGCCTG CCCGACCTTC TTCCCGAGAC GCGGATGAAG
GCGCGCATCG CCGAGGGCCG CAAGGGCCCG CTGGCGGTCG AGCTGATCAC CGACTGA
 
Protein sequence
MNEKSVASVT LRDVSVDSGQ ECVSPAAGEP AETVVGAVKW FDATRGFGFI ATDGDRGDVL 
VHFSVLRDHG RRTLPEGARI ACEVVARDRG LQARRILAID LSTATGPDPD LIAKRNADRV
DPTQLVDQAG EPEPVIVKWF NRLKGYGFLV RDGETQDIFI HMETVRRAGL PDLLPETRMK
ARIAEGRKGP LAVELITD