| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2524 |
|---|
| Symbol | |
|---|
| ID | 5197104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2807029 |
|---|
| End bp | 2807733 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640582072 |
|---|
| Product | ThiJ/PfpI domain-containing protein |
|---|
| Protein accession | YP_001263021 |
|---|
| Protein GI | 148555439 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0693] Putative intracellular protease/amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCA AGATATTGTT CGTCCTGACA TCGCAGGCGG ACCTGGGCGG CACGGGACAG
AAGACCGGGA CCTGGCTCGA GGAGCTGGCG AGCGCCTGGT ATCTGCTCGC CGACGATGGC
CAGCGGTTGA CGCTCGCCTC GATCGCGGGC GGCGCGGCGC CGCTCGATCC GGCGAGCCTC
GAGGCGCCGT GGCTGACCGA CGCGGGTACG CGCTTCCTCG ATGATCCGGC GGCGGTGGCC
GCGCTCGCCG CGACGCCGCG CCTGGCGGAG CTCGATCCGT CGAGCTTCGA CGCGGTCTAT
TTCGTCGGCG GCGCCGGCGC GGCATGGGAC TTCCCGGTCG ATCCGGCGGT CAAGGCGACC
ATCGAGACGA TCGATCGCCA GGGCGGGCTG GTGTCGGCGG TGTGCCACGG CGTCCTCGCG
CTGGCCGGCG CGACCACCGC CGACGGCCGC CCGCTCGTCG CCGGCCGGCG CGTCACCGCG
ATCAGCAATG TCGAGGAGGA GCTGACCACC TTCGACAAGG TCGTCCCCGT CCTGCCCGAA
ACCCGCCTCG TCGAGCTGGG CGGCGTCTAT GCCAAGGCGG CCGAGCCGTT CGGCGGCCAT
GTCGAGGTCG ACGGCAACAT CGTCACCGGC CAGAACCCGG CCTCCGCGCC GCTCGTCGCG
GCGGCGCTGC TCGATGCGCT CGCCGTCGAG CCGGCCGGGG CCTGA
|
|---|
| Protein sequence | MSSKILFVLT SQADLGGTGQ KTGTWLEELA SAWYLLADDG QRLTLASIAG GAAPLDPASL
EAPWLTDAGT RFLDDPAAVA ALAATPRLAE LDPSSFDAVY FVGGAGAAWD FPVDPAVKAT
IETIDRQGGL VSAVCHGVLA LAGATTADGR PLVAGRRVTA ISNVEEELTT FDKVVPVLPE
TRLVELGGVY AKAAEPFGGH VEVDGNIVTG QNPASAPLVA AALLDALAVE PAGA
|
|---|
| |