Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2522 |
Symbol | |
ID | 5197102 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2802005 |
End bp | 2804107 |
Gene Length | 2103 bp |
Protein Length | 700 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640582070 |
Product | TonB-dependent receptor |
Protein accession | YP_001263019 |
Protein GI | 148555437 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.644124 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAGGG GGCTGCTCAT CGGCGTGGCG GCGGCGGGAT TCGCGGGCGT CATGGCGACC GCGCCGGCGG CGGCGCAGGT CGTCGCCAGC GATCAGGACG AACTGATCGT CACCGCGCGC AAGCAATCGG AGAATATCCG GGACGTGCCC GACACGATCC AGGCCTTCTC CGCGACGACG CTCGAACGGG CGGGCATCGA ATCGGTCAAC GACCTGACCC AGATGGTGTC GGGCTTCCGC ATCGTCGAGG CGCAGCAGCC CGGCGTCGTG CTGATCAACA TCCGCGGCAT CGGCCAGGTG CGCAACGGCG AATCGCCGGT CGCGGTGGTC GTCGACGGGG TGCAGCAGAA CTCGCCGAAC CAGATCACCC AGGACCTGTT CGACGTCGAG CGGATCGAGA TCCTCAAGGG GCCGCAGGGC GCGCTCTATG GCCGCAACGC GATCGGCGGC GCGATCAACA TCGTCACCAA GGAGCCGGGC GACAGCTTCG GCGGCAGCGC CGAGCTCGGC TATGCCGAGG GCGACGAGTT CCGCGCCAAG GCCTCGATCA CCGCGCCGCT GGGCGAGAAG GCGGGCTTCC GCCTGGCGGG CAGCTATCTG AACCGCGACG GCCAGATCAC CAATTCGACG CTCAACAAGA AGGTCGACTT CGACGAGACC TGGGCGGTGC GCGGCGCGCT GCTGCTCAAG CCGACCGAGA CGCTGAAGAT CGACCTGCGC GGCAGCTATT ACGACCAGGA TGCCGGCGCC TCCTGGTATG TCGGCGGCCC GGCGAACAGC CCGCGGGTGC CGGTGGTCGG CAACATCCTC GGCAAGGCGG GACGCAAGCT GGGCGACGTC TCGGCGAAGA TCGACTTCGA CCTGGGCTCG GTCGCGCTGA CCTCGGTCAC TGCCTGGTCG TCGGTCAAGT CGGACCTGTT CGAGGAGCTC GACTGGGAGC CGCAGGACCT CGCCGCCGCC ACCCAGACGC TCGACGTCAA GGCGTGGAGC GAGGAGCTGC GGCTGTCGTC GAACACCCCC GGATCGGCGC TGCGCTGGAT GACCGGGCTC TATTATCTCC ACACCGACCG CACCCTGAAC ACCGCGATCT TCCTCGGCCC CGACCTGACC GGCCTGCCGA GCCGGGTGCT CGGCTCGCGG CTGATCGCGA AGGACGACAA CGACGCCTAT GCGGCGTTCG GCCAGGTCAA CTACGACATC GTCGAGCATC TCGAGCTGAC CGCCGCGCTG CGCTACGACA TCGACCGGCG CCGCCAGGAC GACGTCTCGC CGCCGGTGCC CGCCGTCGTC CCGCGCTACA AGGGGACGTA CAAGTCGCTC CAGCCCAAGC TGTCGCTGGC CTACAGCTTC CCCGGCGGGT CGCTCGCCTA TGCGACCGTC GCCAAGGGCT TCCGCAGCGG CGGCTTCAAC TCGAACGCGG TGGTCACGCG CGAGTTCAAG AAGGAGGAGC TGTGGAACTA TGAGCTCGGC TTCAAGACCG CGCTCGCCGA CCGCAAGCTC TACCTGAACG GCGCCATCTT CTACAGCGAC ATCACCGACC GGCAGGTGTT CGGCCTCGAC CTCAGCACCG GCCCGGCGCA GTTCATCGCC AACCCGATCC CCAAGTCGAG CGTCTGGGGC GCCGAGCTGG AGATGACGGC GCGCCCGGTC AAGGGGCTGG AGCTGTCGAT GGGCGCCAGC CTGATGGACA CGAAGATCAA CACATATGAC GTGACGGTCT TCTCGGGCAC CGCCGCGCGC GGCGACTTCA AGGGCAACAA GCTCAACCAG GTGCCGCGCT ACACGCTCAA CGCGGCGGCG CAATACACCG CCGATCTGGG CGGCAGCAGC CTGATCTCGC GCGTCGACGT CTCCGGCTGG GGCGGCGACT ATTATTGGGA GATCGACAAC GCCCAGAAGC AGAAGCCGGT CTGGCTGGTC AATGCGCGGC TGACCTGGGC GGTCGGCAAG GTCGAGCTGA CCGGCTTCGT CAAGAACCTG TTCGACCGGC GCTACGACGT CGAGTTCGTG CCGGTCAATT TCGGCGGCAC GATCACCGGC AAGGACCTGG GCTCGGCGTC GCCGCCCCGC CAGATCGGCG GCAGCGCCAA GGTGCGTTTC TGA
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Protein sequence | MKRGLLIGVA AAGFAGVMAT APAAAQVVAS DQDELIVTAR KQSENIRDVP DTIQAFSATT LERAGIESVN DLTQMVSGFR IVEAQQPGVV LINIRGIGQV RNGESPVAVV VDGVQQNSPN QITQDLFDVE RIEILKGPQG ALYGRNAIGG AINIVTKEPG DSFGGSAELG YAEGDEFRAK ASITAPLGEK AGFRLAGSYL NRDGQITNST LNKKVDFDET WAVRGALLLK PTETLKIDLR GSYYDQDAGA SWYVGGPANS PRVPVVGNIL GKAGRKLGDV SAKIDFDLGS VALTSVTAWS SVKSDLFEEL DWEPQDLAAA TQTLDVKAWS EELRLSSNTP GSALRWMTGL YYLHTDRTLN TAIFLGPDLT GLPSRVLGSR LIAKDDNDAY AAFGQVNYDI VEHLELTAAL RYDIDRRRQD DVSPPVPAVV PRYKGTYKSL QPKLSLAYSF PGGSLAYATV AKGFRSGGFN SNAVVTREFK KEELWNYELG FKTALADRKL YLNGAIFYSD ITDRQVFGLD LSTGPAQFIA NPIPKSSVWG AELEMTARPV KGLELSMGAS LMDTKINTYD VTVFSGTAAR GDFKGNKLNQ VPRYTLNAAA QYTADLGGSS LISRVDVSGW GGDYYWEIDN AQKQKPVWLV NARLTWAVGK VELTGFVKNL FDRRYDVEFV PVNFGGTITG KDLGSASPPR QIGGSAKVRF
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