Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2500 |
Symbol | |
ID | 5199485 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2775074 |
End bp | 2777275 |
Gene Length | 2202 bp |
Protein Length | 733 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640582048 |
Product | TonB-dependent receptor |
Protein accession | YP_001262997 |
Protein GI | 148555415 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACGAC GTGGAAACCA CCGGCGCATC GTCGCCGCAC TTCTGGCGAC GGCGACCGTC GCGGCGCTGC CGTCGCCGGC CGCCGCCGCG CCGACGGCCG AGGACCGAAC CGGCGCCGAC AATGGCGAGA TCGGGACGAT CGTCGTCACC GCGCGGCGCC GCGAGGAGAA TCTGCAGAAC GTCCCCGACA CCATCACCGC CTTCTCGCCG GCGGTGATCG AGGAGCGCCG GCTCGACACG ATCGGCGACT TCCTGCAGCT CACGCCTAAC GTCAACATCA CCGCCGACCA GGACGCCGCG ACCAACAACA TCTCGATCCG CGGCCTGGGA TCGAACCGCA ACCAGGCGGC GGCGGTCGCC TTCTCGGTCG ACGGGGTGAT CCTGCCCGAC GCCGACGCCT TCACCATGGA CCTGAGCGAC GTCGAGCGGC TCGAGGTGCT GAAGGGGCCG CAGGGCGCGC TCTACGGCAA GGGGGCGATC GCAGGCGCGA TCAACATCAC CACGCCGCGC CCGACCGACA CGATCGAGGG CAAGGCCGAG ATCGGCTATG AGAGCGGCGA TATCTTCCGC GCCTTCGGCG CGATCGGCGG GCCGATCGCC GGCGACAAGA TATTGGCGCG GCTCAGCGTC CTCTATCGCA ACGGCGACGG GACGATCGAC AACGACCTGA CCGGCAAGCC CGCCAATCCG CAGGACCAGT TCCGCATCCG CGGCCGCGTG ATCCTGCAGC CGAGCGAGGG GCTGGAGGTC GACCTGCGCG CCTCCTGGTA TGACGAGAAG GCGGGCTCGG TCTATTTCAG CGGCTTCGAC GTGCTGGGCA CGACCGGCGG CGCGATCACC GAGGACATCG CCGGCCGCAA CCCCAATTAT GACGGCCCGT CGAGCACCCG GCGCAAGGTC ACCGACCTGT CGATGCTGGT CAATCTCGAC ACCGCGATCG GCACGCTGAC CGCGATCACC GCCTATGACG ACATCAAGGT CGACTTCCAC GAGGATATCG AGGTGTCGCC CCTGCCGCTG GTGCCCGACA CCAACCAGCT CCGCCGGACC AAGGGCTTCA GCCAGGAGCT GCGCCTGACG TCCGCCGGGG ACCAGCCGCT GCGCTACATC CTCGGCGGCT ATTACCAGCG GACGACGCGC GCGATCCGCA ACGTCGTCAC GCTCGACCTC TGCCTGTTCG CCGGGACCTG CTTCGCGCCG GGCGGCGGCT TCACCTCGGG CGGGGTGCTG ACGACGCCGC TCGCCGACTA TGCCAGCCGC TTCAACCAAT ATTCGCTGTT CGGCCAGCTC AACTACGACC TGACCGACCG GATCGAGCTG ACCGCCGCGC TGCGCTACGA CACGATCGAC GGACGGCAGG ACGACAGGGC TGCCGGGGTC GTCGACACGG CGACCTTCTC GCGGCTCCAG CCCAAGCTCA GCCTGTCCTA TCGCCCGACC GAGGCGCTCA CCCTCTACGG AACCTATTCG CAGGGCTTCA AGAGCGGGGC GTTCAACCCG GTGTCGGCGG GCCCCGGCTT CCCGCGCGTC GTCGCGCCGG AGGTGTCGAA GAATTACGAA CTGGGCCTGC GCACCAGCCT GTTCGACCGG CGGGTTCGCG CCAATGTCGC GGCCTTCTAC ACCCAGCATC TCAACCCGCA GATCTTCCAG CTCGACCCCG CGACCTTCGG GCAGGGATCG CTCAACGCGA AGGAGGCGCG GATCAAGGGC TTCGAATTCG ACGTGGTCGC GCGGCCGACC CGCTTCTGGG ACGTCAACGT CGCCTTCGGC TATGTCGACG CGAAGATCCA CGACTTCGAC GGCGTCACCA ACGCCTATGT CGGGCAGCAG CTTCCCAACG CCCCGAAATA CACCCTCAAC CTCGGGACCG GCTACCGCCT CCCCCTAAAA GACGACTTAA GCCTGCGGGT GCGGGCCGAC TACAAGCTGA CCGGGCGCGA ATCGTTCCAG GATTTCCAGT TGCCGACCAA TCCCGACCTC TACCTGTACC AGAAGGCGTT CGGGCTGCTC GACGGGCAGG TCGGGCTGGA GGCCGACCGC TGGGCGGTGA CCGTGTTCGG GCGCAACCTG CTCAAGCGGC GCTACGCGAC CTCGGCCTTC TCGCGCTACA TCTTCTCGGT GGCGCTGGTG CCGCTGGGCA CCGACGCGGT CCAGCCCGAT CCCGGCCGCA CCTTCGGCGT CGAAGCGCGG GTGCGCTTCT GA
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Protein sequence | MERRGNHRRI VAALLATATV AALPSPAAAA PTAEDRTGAD NGEIGTIVVT ARRREENLQN VPDTITAFSP AVIEERRLDT IGDFLQLTPN VNITADQDAA TNNISIRGLG SNRNQAAAVA FSVDGVILPD ADAFTMDLSD VERLEVLKGP QGALYGKGAI AGAINITTPR PTDTIEGKAE IGYESGDIFR AFGAIGGPIA GDKILARLSV LYRNGDGTID NDLTGKPANP QDQFRIRGRV ILQPSEGLEV DLRASWYDEK AGSVYFSGFD VLGTTGGAIT EDIAGRNPNY DGPSSTRRKV TDLSMLVNLD TAIGTLTAIT AYDDIKVDFH EDIEVSPLPL VPDTNQLRRT KGFSQELRLT SAGDQPLRYI LGGYYQRTTR AIRNVVTLDL CLFAGTCFAP GGGFTSGGVL TTPLADYASR FNQYSLFGQL NYDLTDRIEL TAALRYDTID GRQDDRAAGV VDTATFSRLQ PKLSLSYRPT EALTLYGTYS QGFKSGAFNP VSAGPGFPRV VAPEVSKNYE LGLRTSLFDR RVRANVAAFY TQHLNPQIFQ LDPATFGQGS LNAKEARIKG FEFDVVARPT RFWDVNVAFG YVDAKIHDFD GVTNAYVGQQ LPNAPKYTLN LGTGYRLPLK DDLSLRVRAD YKLTGRESFQ DFQLPTNPDL YLYQKAFGLL DGQVGLEADR WAVTVFGRNL LKRRYATSAF SRYIFSVALV PLGTDAVQPD PGRTFGVEAR VRF
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