Gene Swit_2471 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2471 
Symbol 
ID5198060 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2743869 
End bp2746067 
Gene Length2199 bp 
Protein Length732 aa 
Translation table11 
GC content64% 
IMG OID640582019 
ProductTonB-dependent receptor 
Protein accessionYP_001262968 
Protein GI148555386 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTCA GCAACTCTGC CGCAAAGGGC GGCGCCATTG AAACTACGCG TGCGCATTTC 
TTTGCCCACG GCGCGATGAT GGCGCTGGCC GTCGCGAGCG CGGGTTTCTG GAACGCGGCG
GCGCATGCAC AGGTCGACAT GGCCGCCCAG GCCGAAGCGG CCGGCGCCGA CGAGATCGTC
GTTACCGCCC GCAAGCGGCA GGAAGCGTCG CAGAATGTTC CGCTGTCGGT CGCCGCGTTC
AACGGCGAGA TGCTTCAGTC GCGCTCGGTC ACGACCGTTT CCGACATCCA GGGCCTCGTC
CCCGGCCTTC ACTATCAGGA GCGCGGCAAT CTCCAGACCG AGCTGACGAT CCGCGGCGTC
GGCGGCGACG CCCGCAACCC CGGCATCGAC GCCGGTGTCG GCATGTATAT CGACGGCGCC
TATATCCCGC GCACCTCCGG CTATAATGCC GACCTGTCCG ACATCGCCCA GGTCGAAGTG
CTTCGCGGCC CGCAGGGCAC CCTGTTCGGC AAGAACACGA TCGGCGGCGT GATCAACATC
GTGACGAAAA AGCCGACCGA GGAACTGACC GGTTTCGTCT ATGGCAGCTA CGGCAATTAT
GATGCCGTTC GTACCCAGGC GGCGATCTCC GGCGGGCTCG CTCCGGCGCT GTCGGCCAAG
GTCACCGTGG CGAGCTGGAA TCGCCAAGGC TATATCCGCA GCCGCGTCCG GAACGAGCGG
TTGAACAACG AAGATCGTCT CGGCGGCCGG CTCCAGCTCC GCTACAATCC GGACACGCAG
CTCGATGTCA ATTTCTCGGT CGACGGCACG CGCGACCGCC GGCGCGGCGT CCTCAACCAG
ATCGGCTCGC CGGCCGGCGC GGCGGCGCCC TATTTCACCG GCAACCGCTT CGTGATGGAT
GCGGATCAGC GCAACAGCGA CGCCCGCGAC ATGTGGGGCA TGACGCTGGG CATCGATTAT
GTCCTGGCCA ACGACATGAC GATCACGTCG GTCACCGCCT ATCGGGACAT CGATATCCTG
GTCTACAGCG ACATCGACCA GACCCCGCTC GACCTGTTCC ACTCGGGGCC GTTTACCGAC
GACACGACGA TGATCAGCCA GGAATTGCGG CTCGTTTCGC CGGGCAACAA GCCGTTCCGC
TACGTGCTGG GCCTCTTCGG CTACAAGCAG GACATCGACT CCGACCGCGA CATCTTCATC
AACGGCGCCC GCTCGATCGT CCTCGATACG GCGGCCAATA CCGACAGCTA TGCGGCCTTC
GGCAACTTCG ACTATGATCT GACCAGTCAG CTGACCGCCA CGGTCGGCCT GCGCTATTCG
ATCGACAAGA AGGACGGCAA GTTCAACCAG CAGCGAACGG GACTGGACTA TGCGATCCCG
CTCAAGCGGA CCGACAAGAA CCTCTCCTGG ACGGGCAGCC TGCTCTACAA GATCACGCCG
CGCCTCAGCA CCTATGCCAC GGTTTCGCGG GGCTTCAAGG CGGGCGGATT CAACCTCGAT
ACCGCTGGTG CGGTCGGCCT CACGGCATCG GACCTGAACT TCCTGCCGGA GCGGGTGACC
AATTACGAGG TCGGCCTGAA GGGCCGCGCG ACCGACTGGA TGCGCTTCTC GCTCGCCGTC
TTCCAGATGG ACTACAAGAA CAAGCAGGTT TCCCAGTTCG TCAATCCGCC GGTCGGCAAT
GTGCCCGTCG TGCTGGTCAC CAATGCCGGG CAGGCGCGGA TCAAGGGTGT CGAGTTCGAC
ACGACGCTGA CCCCGGTGCA CGGCCTGTCG CTGTCGGGCA ACGTCAGCTA TCTCGATGCC
AAATACCGGT CCTTCCCGAA CGCCGCCGTG GTAGGGGGCG TGCTCGTCTC CTACACCGGC
AACAGGGTGG AGCGGACCCC GAAGTGGACC GCCGGCGGCA GCATCGACTA TCGCCATCCG
ATCGGCAGCG GCGATCTCGT GATGGGCGCC AACGTCTCGT ACAACGGCGC GGTCGATCTC
CAGCCGGACA ACCTGCCGCG CAACTATGAA GGGTCCTACA CGCTGGTCGA CGCCCGGTTC
GGCTATGAGA TGGCCGACGG CAAATGGGGC CTGTATCTCT GGGGCAAGAA CCTCACCAAG
GAGAACTTCG CGACCTTCAA GCGCCAGTTC GCCGGTCTCG ATCAGGTGGC CTATGGGGCG
CCGAGAACCT ATGGGGTGGA AGCTCGCTTC AAGTTCTGA
 
Protein sequence
MKLSNSAAKG GAIETTRAHF FAHGAMMALA VASAGFWNAA AHAQVDMAAQ AEAAGADEIV 
VTARKRQEAS QNVPLSVAAF NGEMLQSRSV TTVSDIQGLV PGLHYQERGN LQTELTIRGV
GGDARNPGID AGVGMYIDGA YIPRTSGYNA DLSDIAQVEV LRGPQGTLFG KNTIGGVINI
VTKKPTEELT GFVYGSYGNY DAVRTQAAIS GGLAPALSAK VTVASWNRQG YIRSRVRNER
LNNEDRLGGR LQLRYNPDTQ LDVNFSVDGT RDRRRGVLNQ IGSPAGAAAP YFTGNRFVMD
ADQRNSDARD MWGMTLGIDY VLANDMTITS VTAYRDIDIL VYSDIDQTPL DLFHSGPFTD
DTTMISQELR LVSPGNKPFR YVLGLFGYKQ DIDSDRDIFI NGARSIVLDT AANTDSYAAF
GNFDYDLTSQ LTATVGLRYS IDKKDGKFNQ QRTGLDYAIP LKRTDKNLSW TGSLLYKITP
RLSTYATVSR GFKAGGFNLD TAGAVGLTAS DLNFLPERVT NYEVGLKGRA TDWMRFSLAV
FQMDYKNKQV SQFVNPPVGN VPVVLVTNAG QARIKGVEFD TTLTPVHGLS LSGNVSYLDA
KYRSFPNAAV VGGVLVSYTG NRVERTPKWT AGGSIDYRHP IGSGDLVMGA NVSYNGAVDL
QPDNLPRNYE GSYTLVDARF GYEMADGKWG LYLWGKNLTK ENFATFKRQF AGLDQVAYGA
PRTYGVEARF KF