| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2456 |
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| Symbol | rpsA |
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| ID | 5196896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2726296 |
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| End bp | 2728005 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640582003 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001262953 |
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| Protein GI | 148555371 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.358279 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACTA TGGCAAACCC GACCCGCGAC GATTTCGCGG CTATGCTCAA TCAGACCCTC
GGCGGCGAGA ATGAAGGCTT CGAAGGCCGC GTCGTCAAGG GCACCGTCAC CGCGATCGAA
AACGACATGG CCGTCATCGA CGTCGGCCTG AAGTCGGAAG GCCGCGTGGC GCTGCGCGAA
TTCGCGCCCG CGCCCGGCCA GAAGGCGGAC CTGAAGGTCG GTGACGAGGT CGAGGTCTAT
GTCGACCGCG TCGAGAACGT CCATGGCGAA GCGATGCTCA GCCGCGACCG CGCCCGCCGC
GAAGCCGCCT GGGACAAGCT CGAAGCCGAA TTCTCGCAGT CCAGCCGCGT CGAGGGCGTG
ATCTTCGGCC GCGTCAAGGG CGGCTTCACC GTCGACCTGA ACGGCGCCGT CGCCTTCCTG
CCGGGCTCGC AGGTCGACAT CCGCCCGGTC CGCGACGTCA CCCCGCTGAT GGACATCCCG
CAGCCGTTCC AGATCCTGAA GATGGATCGC CGCCGCGGCA ACATCGTCGT GTCGCGCCGC
GCCGTCCTCG AAGAGACCCG CGCCGAGCAG CGTTCGGGCC TGATCCAGTC GCTCCATGAG
GGCCAGGTGA TCGAGGGTGT CGTCAAGAAC ATCACCGATT ACGGCGCCTT CGTCGACCTG
GGCGGCATCG ACGGCCTGCT GCACGTCACC GACCTCAGCT ACAAGCGCGT CGGCCACCCG
AACGAGATGA TCAACATCGG CGACGTCGTG AAGGTGCAGA TCATCCGCAT CAACAAGGAC
ACGCAGCGCA TCTCGCTCGG CATGAAGCAG CTCGAGAGCG ATCCGTGGGA GGGTGCGGCC
GCCAAGTACC CGATCGGCGG CAAGTTCACC GGCCGCGTCA CCAACATCAC CGAATATGGC
GCCTTCGTCG AGCTCGAGCC GGGCATCGAG GGTCTGGTCC ACGTCTCGGA GATGAGCTGG
ACCAAGAAGA ACGTCCATCC GGGCAAGATC GTCTCGACCA GCCAGGAAGT CGAAGTCGTC
ATCCTCGAGG TCGACGCCGA CAAGCGCCGC ATCTCGCTGG GCCTCAAGCA GGCGATCACC
AACCCGTGGG AGGCCTTCGC CGAAGCGCAC CCGGTCGGCT CGGTGGTCGA GGGCGAGGTC
AAGAACGCGA CCGAGTTCGG CCTGTTCGTG GGCCTCGACA ACGACGTCGA CGGCATGGTC
CACATGTCGG ACATCGCCTG GGGCGTGACC GGCGAGGAAG CCCTGTCGCT CCACCACAAG
GGCGAGACCG TCAAGGCGAT CGTGCTCGAC ATCGACTCCG AGAAGGAGCG CATCTCGCTC
GGCATCAAGC AGCTCGAGCG TGGCGGCGTC GGCGCGGCGA CCGCGGACGG CTCGAAGCTC
AACAAGAACG CGGTCGTCAC CGTCACGGTC CTCGCGATCA CCGACGGCGG TCTCGAGGTG
CAGGCGGGTG ACGACGGCGC CGCCGGCTTC ATCAAGCGCA GCGACCTCGG CCGCGACCGC
GACGAGCAGC GTCCGGAGCG CTTCCAGGTC GGCCAGAAGT TCGACGCGAT GGTGACCGGC
TTCGACCGGT CGAAGAAGCC GACCTTCTCG GTCAAGGCGA TGCAGATCGC CGAAGAGAAG
CAGGCCGTCG CGCAGTACGG CTCGTCGGAC TCGGGCGCTT CGCTCGGCGA CATCCTCGGC
GAAGCCCTCA AGGCCCGCCA GAACAGCTAA
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| Protein sequence | MATMANPTRD DFAAMLNQTL GGENEGFEGR VVKGTVTAIE NDMAVIDVGL KSEGRVALRE
FAPAPGQKAD LKVGDEVEVY VDRVENVHGE AMLSRDRARR EAAWDKLEAE FSQSSRVEGV
IFGRVKGGFT VDLNGAVAFL PGSQVDIRPV RDVTPLMDIP QPFQILKMDR RRGNIVVSRR
AVLEETRAEQ RSGLIQSLHE GQVIEGVVKN ITDYGAFVDL GGIDGLLHVT DLSYKRVGHP
NEMINIGDVV KVQIIRINKD TQRISLGMKQ LESDPWEGAA AKYPIGGKFT GRVTNITEYG
AFVELEPGIE GLVHVSEMSW TKKNVHPGKI VSTSQEVEVV ILEVDADKRR ISLGLKQAIT
NPWEAFAEAH PVGSVVEGEV KNATEFGLFV GLDNDVDGMV HMSDIAWGVT GEEALSLHHK
GETVKAIVLD IDSEKERISL GIKQLERGGV GAATADGSKL NKNAVVTVTV LAITDGGLEV
QAGDDGAAGF IKRSDLGRDR DEQRPERFQV GQKFDAMVTG FDRSKKPTFS VKAMQIAEEK
QAVAQYGSSD SGASLGDILG EALKARQNS
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