| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2415 |
|---|
| Symbol | |
|---|
| ID | 5196207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2683920 |
|---|
| End bp | 2684888 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640581961 |
|---|
| Product | ornithine cyclodeaminase |
|---|
| Protein accession | YP_001262912 |
|---|
| Protein GI | 148555330 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.151404 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.117495 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCG CCTATTATGA CGCGGAGCAG GTCGAACGGC TGCTCGACTA TCCGGGCTGC
ATCGCGGCGG TGCGCCGGGC GATGCGGAGC CTGTCGGAAA GCGGCAAGGC GCAGCCGCTG
CGCCAGATCG TCCGGATCGC CGACAAGACG ATGTTCGGGG TGATGCCGGG CGACCTGGCG
GCGATCGGCA GCTTCGGCGC CAAGCTGGTC AGCGTCGCCG AGGACCCCGC CCGCCCCGGC
CGCGCGCGCC ACCGCGGCGT GGTGGTCGCC TATGCCGCCG ACAGCGCCGA GGTCGAGGCG
ATCGCCGACG CCGAGGCGGT GACCGCGATC CGCACCGCCT GCGCGACGGC GGCGGCAACC
GACGCGCTGG CGCGGCCCGA TGCGCGCGTG CTGGCGATCT TCGGCGCGGG CACCCAGGCG
GAGACGCACA TCCGCGCGCT GCGCCACGTC CGCGCCTTCG ACCGCATCCT GCTGTGGGGC
CGGTCGGCCG ACAGCATAGC GGCGCTCGCG GCGCGCCTCT CGCGGGACCT GGGGATCGCC
GTCGAGGCGA CCACCGACGG CCAGCGCGCC GCCGGCACGG CCGACGTCAT CTGCACGGTC
AGCGGCTCGG CCGAGCCGAT CCTGTTCGGC GCCTGGGTCC GCAAAGGGAC CCATGTCAAC
CTGGTCGGGT CGAGCATGCT CGGGCCGGTC GAGGTCGATA GCGCCCTCGT CGCCGCCGGC
CGCTACATCG CCGACTATCG ACCCGGCGCG CTCGCCCAGG CGTCCGAGCT GGCGGTCGCG
CGCGACGCCG GCCTCGTCAC CGACGACCAT GTCGTCGGCG AGATCGGCGA GGTCTTCGCC
GGCACCCTCG CGGGCCGCGA GAGCCCCGGC CAGATCACCC TCTACAAGTC GCTCGGCCAT
GTCGTGCAGG ACCTCGCCGC CACGGCCTAT TTGCACCGAC GCGCCCTTTC GGAAGGCATC
ACCCCGTGA
|
|---|
| Protein sequence | MNIAYYDAEQ VERLLDYPGC IAAVRRAMRS LSESGKAQPL RQIVRIADKT MFGVMPGDLA
AIGSFGAKLV SVAEDPARPG RARHRGVVVA YAADSAEVEA IADAEAVTAI RTACATAAAT
DALARPDARV LAIFGAGTQA ETHIRALRHV RAFDRILLWG RSADSIAALA ARLSRDLGIA
VEATTDGQRA AGTADVICTV SGSAEPILFG AWVRKGTHVN LVGSSMLGPV EVDSALVAAG
RYIADYRPGA LAQASELAVA RDAGLVTDDH VVGEIGEVFA GTLAGRESPG QITLYKSLGH
VVQDLAATAY LHRRALSEGI TP
|
|---|
| |