| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2387 |
|---|
| Symbol | |
|---|
| ID | 5198724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2650635 |
|---|
| End bp | 2651996 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640581933 |
|---|
| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
|---|
| Protein accession | YP_001262884 |
|---|
| Protein GI | 148555302 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.844507 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCGCG GCATGTCGCG CCCTGCCCCC AAGAGCTTCC ACGTCAAGTC GTTCGGCTGC
CAGATGAACG TCTATGACGG CGCGCGCATG GCCGAGCTGC TCGAAGCGCA GGGCATGCAC
GCCGCCGACA GCGCCGACGC CGCCGACCTG GTCGTGCTCA ACACCTGCCA CATCCGCGAG
AAGGCGGCCG AGAAGGTCTA TTCGGACATC GGCCGGATCG TGAAGAAGGC CGCCGACGCC
GAGGAGGGCC GGGCGCGGCC GATGATCGCC GTCGCCGGCT GCGTCGCCCA GGCCGAAGGG
CCCGAGATTC CACGCCGCGC CCCCGCAGTC GACATCGTCG TCGGGCCACA GGCCTATCAC
AACCTGCCCC AGCTCGTCGC CGACGCCGCC GAGGGCCGCC GCGCGCTCGA CACCGACATG
CCCGCCGCGT CGAAGTTCGA CACGCTGCCG AAGCGCCGCC GCCAGGGGCC GACCGCCTTC
CTGACCGTGC AGGAGGGCTG CGACAAATTC TGCACCTATT GCGTCGTCCC CTATACGCGC
GGGGCGGAAA TCTCGCGGCC GTGGGGCGCG ATCGTCGACG AGGCGAAGGC GCTGGTCGAC
GCCGGCGCGC GCGAGATCAC CCTGCTCGGC CAGAACGTCA ACGCCTGGAC CGGCGAGGAC
GATCGCGGCC GGACGCAAGG CCTCGACGGG CTGATCCGCG CGCTCGACGC GCTGCCCGGC
CTCGCCCGCA TCCGCTACAC CACCAGCCAC CCCAACGACA TGAGCGACGG CCTGATCGCC
GCGCATGGCG AGGTGGCGAA GCTGATGCCC TTCCTCCATC TGCCGGTGCA GGCGGGATCG
GATCGCATCC TCAAGGCGAT GAACCGCAGC CACGACGCCG CCGGCTATCT GCGCCTGATC
GAGCGGGTCC GCGCGGCGCG GCCCGACATC GCGGTCTCGG GCGACTTCAT CGTCGGCTTC
CCCGGCGAGA CCGACGAGGA TTTCGAGGCG ACCCTCGCCA TCGTCCGCGC GGTCGACCAC
GCCCAGGCGT TCAGCTTCAA ATACAGCCCC CGCCCCGGCA CCCCCGCCGC GTCGATGGAC
GGCCAGGTCG CACCGGCGGT GATGGACGAG CGGCTGCAAC GGCTCCAGGC GCTGCTCAAC
GAGCAGCAGC ACCGCTTCAA CCTGGCGACG GTCGGCAAGC GCTGCGAGGT GCTGATCGAG
CGCGACGGCA AGAAGCCCGG CCAGCGGATC GGCAAGTCGC CCTGGCTCCA GTCGGTGATC
GTCGAGGACG GCCCGGCGAT CGGCACGCTG GTGACGGTCG ACATCGTCTC GGCCGGACCG
AACAGCCTGA GCGGCGCCCT GGTCGAACAA AAGGCCGCCT GA
|
|---|
| Protein sequence | MGRGMSRPAP KSFHVKSFGC QMNVYDGARM AELLEAQGMH AADSADAADL VVLNTCHIRE
KAAEKVYSDI GRIVKKAADA EEGRARPMIA VAGCVAQAEG PEIPRRAPAV DIVVGPQAYH
NLPQLVADAA EGRRALDTDM PAASKFDTLP KRRRQGPTAF LTVQEGCDKF CTYCVVPYTR
GAEISRPWGA IVDEAKALVD AGAREITLLG QNVNAWTGED DRGRTQGLDG LIRALDALPG
LARIRYTTSH PNDMSDGLIA AHGEVAKLMP FLHLPVQAGS DRILKAMNRS HDAAGYLRLI
ERVRAARPDI AVSGDFIVGF PGETDEDFEA TLAIVRAVDH AQAFSFKYSP RPGTPAASMD
GQVAPAVMDE RLQRLQALLN EQQHRFNLAT VGKRCEVLIE RDGKKPGQRI GKSPWLQSVI
VEDGPAIGTL VTVDIVSAGP NSLSGALVEQ KAA
|
|---|
| |