Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2354 |
Symbol | |
ID | 5199938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2616981 |
End bp | 2618537 |
Gene Length | 1557 bp |
Protein Length | 518 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640581900 |
Product | protease Do |
Protein accession | YP_001262851 |
Protein GI | 148555269 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGTTATG CCTATGGGAT CACCGCGGCC TTGCTGGCGG GCGGTGCGGC CGCAACCCTG ACCTTGCAGC AACCGGTCGG CGCCCAGGTG GCGCAGAACG CGCCGGGCTC GATCAACGCG ACCGCACCCC GACCGGGCGC GCCGATGAGC TTCGCCGATC TCGCGGCCAA GCTGCAGCCG GCGGTCGTCA ACATCTCCAC CACCCAGAAG ATCCAGGTGC GCGGCGGCGG CAACGCCTTC TCCGGCACCC CGTTCGAGGA ACTGTTCCGG CGCTTCGGCG GCGGCCAGGG CGACGACGGC AAGCCGATCA CGCGCGAGGC GACCTCGCTC GGCTCGGGCT TCATCATCTC GCCCGACGGC TATGTCGTCA CCAACAACCA CGTCATCTCG GCCTCGCCCG AGGGCGGCAG CGGCGCGGTG GTCAGCTCGA TCACCGTCAC CCTGCCCGAC CGCAAGGAAT ATAAGGCGAC GATCGTCGGC CGCGACCAGA CGTCGGACCT GGCGCTGCTC AAGATCGACG CGAAGAACCT GCCCTTCGTC CAGTTCGGCG ATTCGACCCG TACCCGGGTC GGCGACTGGG TGGTGGCGAT CGGCAATCCG TTCGGCCTCG GTGGCACGGT GACGGCGGGC ATCGTCTCGG CGCTGCACCG CTCGATCGGC ATCAACGGCC CCTATGACCG CTACATCCAG ACCGACGCCT CGATCAACCA GGGCAATTCG GGCGGCCCGA TGTTCGATCT GCAGGGCAAC GTCATCGGCA TCAACACGGC GATCTTCTCG CCGACCGGCG GCAATGTCGG CATCGGCTTC GCGATCCCGG CCGAGGAGGC CAAGCCGATC ATCGACCAGC TCCGCACCGG CCAGCGGGTG CGGCGCGGCT ATCTGGGCGT CGGCATCCAG CCGATGACCG AGGACATCGC CAGCAGCCTG GGCCTGCCCA AGGACCGCGG CGAGATCGTC GCCCGGGTCG AGCCGGGCGA GGCGGCGGCG CGCGCGGGCA TCCGCCAGGG CGACGTCATC GTCCGCGTCG ACAATCAGGA GATCACCCCC GACAACACGC TGTCCTACAT CGTCGGCAAG GCCGCGGTGG GCGCGCGCCT GCCGATCGAG CTGATCCGCG AGGGCCAGCG CAAGACGGTG ACGGTGACGC TGGGCGAACG CCCGCCCGAG GACCAGCTCG CCAGCGCCGG CAACCTCGAC GAGGACCAGG GCGACGACGC CCCGGGCGCG GCGCAGAGCG CGCCCGACCA GTCGACCCGC ACGGCGATCG GCCTCGGCCT GCAGACGCTG ACGCCCGACA TCGCCCGGCG CCTGGGCGTC TCGTCGACGC TGCGCGGCGT GGTGATCAAC TATGTCGATC CGTCGAGCGA TGCCGCGGCC AACGGCTTCC AGCCGCGCGA CATCATCCTG CAGATCAACA ATGTGCCGGT GGCGACGGTC CAGGCGGCGG CGGCGAAGAT CACCGAGGCG CAGAAGGCCA AGCGCCCGAC TGTGCTCTTG TTCGTCCAGC GCGGCAACAA TCCGCCGCGC TATGTGGGCG TGCAGATCCG CAACTGA
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Protein sequence | MRYAYGITAA LLAGGAAATL TLQQPVGAQV AQNAPGSINA TAPRPGAPMS FADLAAKLQP AVVNISTTQK IQVRGGGNAF SGTPFEELFR RFGGGQGDDG KPITREATSL GSGFIISPDG YVVTNNHVIS ASPEGGSGAV VSSITVTLPD RKEYKATIVG RDQTSDLALL KIDAKNLPFV QFGDSTRTRV GDWVVAIGNP FGLGGTVTAG IVSALHRSIG INGPYDRYIQ TDASINQGNS GGPMFDLQGN VIGINTAIFS PTGGNVGIGF AIPAEEAKPI IDQLRTGQRV RRGYLGVGIQ PMTEDIASSL GLPKDRGEIV ARVEPGEAAA RAGIRQGDVI VRVDNQEITP DNTLSYIVGK AAVGARLPIE LIREGQRKTV TVTLGERPPE DQLASAGNLD EDQGDDAPGA AQSAPDQSTR TAIGLGLQTL TPDIARRLGV SSTLRGVVIN YVDPSSDAAA NGFQPRDIIL QINNVPVATV QAAAAKITEA QKAKRPTVLL FVQRGNNPPR YVGVQIRN
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