Gene Swit_2329 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2329 
Symbol 
ID5197499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2587105 
End bp2588943 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content70% 
IMG OID640581875 
Productcobalt chelatase, pCobT subunit 
Protein accessionYP_001262826 
Protein GI148555244 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4547] Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) 
TIGRFAM ID[TIGR01651] cobaltochelatase, CobT subunit 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.287563 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGACC AATCCCCCAT CGAAGGCTTC CGGCTCGTCC TGGGCGGCAC CGCCCGGGCG 
ATGGCGCGCG ATCCCGAGCT CGAACTGAGC TTCACCGCCG AGGCGCCTTC CTTCTCGCTC
AAGCAGCTCC GCGTGCCGAT GCCGTCGCGC AACCTGCCGG CACAGGCGGT GGCCGAGGCG
CGCGGCTTCG CCGACGGCTT CGCGCTGCGG GCGCGCCATC ACGACACCCG CATCCACGAG
CGCGCCGCGC CGGCCGAGCC GATCGCGCGC GCCGTCCACG ACGCGGTCGA ACAGGCGCGG
GTCGAGGCGA TCGGGTCGCG CGCGATGGCG GGCGTCCGCG ACAATCTCAA CAAGGCGCTC
GAGGTGCGGC TGCGCTCCGA TCCGCTGGTG CGGGCGCGGG TGCGCGAGGA AGTGCCGCTG
TCGACCGCGA TCGGCCTGCT GGTGCGCGAG CGGCTGACCG GCCAGCCGGC GCCAGCGATC
GCCGCGCCGG GCCTCGCCCT GGTGCGCGAC TGGATCGAGG AGAAGGCGGG CAAGGACCTC
GACGCGCTCC AGCTCGCCTT TGACGACCAG GCGGCTTTCG CCAGGCTGAT CGGCCGGCTG
CTCGAGGATC TCGAGCTGAC CGAGGGCGAG CAGCTTCCCG AGACCGATCC CGAGGCCGGC
GACAACGACG AGGGCGAGGA TCAGGAGGAA GGCCAGGACC AGCAGGACGA GGGCGAGGAT
TCGGGCGGGT CGAGCGACTC CGAGGTCGAG ATGCGCGCCG AGCAGTCCGA GGGCGGCGAG
GAGGAGGGCG AGCAGCGCGA GCTCGACCAG GACAGCGAGT CCGAGATGGA CAGCGACATG
GGCGACGACG GCGAGGAGGG CATGATGCCC GTCCGCCCGA ACCGCCCGAT GTCCGATCTG
CCGCCGGGCT TCGACTATCA TGCCTATACG ACCCAGTTCG ACGAGGAGAT CGCCGCCACC
GAGCTGTGCG ACGACGAGGA GCTGACGCGG CTGCGCGCCT ATCTCGACCA GCAGCTCGTC
CACCTCCAGG GCGCGGTCAC CAAGCTCGCC AACCGGCTGC AGCGCCGGCT GATGGCGCAG
CAGAACCGAA GCTGGGACTT CGACCAGGAG GAGGGGATGC TCGACGCCGC GCGGCTCGCC
CGCGTCGTCG TCAACCCGGC CCATTCGCTG AGCTACAAGA TCGAGCGCGA CACCGATTTC
CGCGACACCG TCGTCACCCT GCTGATCGAC AATTCGGGGT CGATGCGCGG GCGGCCGATC
TCGATCGCGG CGATCTGCGG CGACATCCTG GCGCGCACGC TCGAACGCTG CGCGGTCAAG
ACCGAGATAT TGGGCTTCAC CACCCGCGCC TGGAAGGGCG GCCAGTCGCG CGAGGCCTGG
CTGGCGGCGG GGCGCCCGCC CGCGCCGGGG CGGCTCAACG ACCTGCGCCA CATCGTCTAC
AAGAAGGCCG ACGACCCCTG GCGCCGCGCG CGCAAGTCGC TCGGCCTGAT GATGCGCGAA
GGGCTGCTCA AGGAGAATAT CGACGGCGAG GCGCTGATGT GGGCGCATAA CCGGCTGATC
GCCCGGCGCG AGGAGCGCAA GATCCTGATG GTGATCTCCG ACGGCGCTCC GGTCGACGAT
TCGACCCTGT CGGTCAACAA CGGCTCCTAT CTGGAGCGGC ACCTGCGCCA GATGATCGGC
TGGATCGAGA ATCGCTCGCC GGTCGAGCTG ATCGCGATCG GCATCGGTCA CGACGTGACC
CGCTATTACC AGCGCGCGGT GACGATCATG GACGTCGAGC AGCTCGGCGG CACCATGGTC
GAGCAGCTTG CTGCTTTGTT TGATTTGGAA CCGCGCTAG
 
Protein sequence
MADQSPIEGF RLVLGGTARA MARDPELELS FTAEAPSFSL KQLRVPMPSR NLPAQAVAEA 
RGFADGFALR ARHHDTRIHE RAAPAEPIAR AVHDAVEQAR VEAIGSRAMA GVRDNLNKAL
EVRLRSDPLV RARVREEVPL STAIGLLVRE RLTGQPAPAI AAPGLALVRD WIEEKAGKDL
DALQLAFDDQ AAFARLIGRL LEDLELTEGE QLPETDPEAG DNDEGEDQEE GQDQQDEGED
SGGSSDSEVE MRAEQSEGGE EEGEQRELDQ DSESEMDSDM GDDGEEGMMP VRPNRPMSDL
PPGFDYHAYT TQFDEEIAAT ELCDDEELTR LRAYLDQQLV HLQGAVTKLA NRLQRRLMAQ
QNRSWDFDQE EGMLDAARLA RVVVNPAHSL SYKIERDTDF RDTVVTLLID NSGSMRGRPI
SIAAICGDIL ARTLERCAVK TEILGFTTRA WKGGQSREAW LAAGRPPAPG RLNDLRHIVY
KKADDPWRRA RKSLGLMMRE GLLKENIDGE ALMWAHNRLI ARREERKILM VISDGAPVDD
STLSVNNGSY LERHLRQMIG WIENRSPVEL IAIGIGHDVT RYYQRAVTIM DVEQLGGTMV
EQLAALFDLE PR