Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2301 |
Symbol | |
ID | 5198365 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2559528 |
End bp | 2561720 |
Gene Length | 2193 bp |
Protein Length | 730 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640581847 |
Product | TonB-dependent receptor |
Protein accession | YP_001262798 |
Protein GI | 148555216 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00156441 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000705013 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCGACTAT ATCACCTGTT CGCCGCCGCC GCCGTCGCGG CCATTGCCAC CGGTTCCGCC CAGGCCCAGA CGGCGCCCGC CGCCGACGCC GACAATATCG GCCTGGAGGA GATCGTCGTC ACCGCGCAGA AGCGCAGCGA GAAGCTCCAG GACATCCCGG TGACCGTCAC CGCGCTGGGC GCCGAGGCGC TCGAACGGCG GCAGGTGCTC TCGGTCTCCG ACCTCCAGTC GATCGCGCCC GGCGTGTCGG TCGGCCAGCA TGCCGGCTAC AACCGGCTGT TCATCCGCGG CATCGGCCTG ACCTCGATCT CCTCGGGCCA GGACCCGAGC GTCTCCTTCC AGGTCGACGG CGTCGTCATC GGCCGGCCCT CGGCGCAGCT CGCCTCCTTC TTCGACCTCG AACGGGTCGA GGTGCTGCGC GGCCCGCAGG GCACGCTCTA CGGCCGCAAC GCGACCGGCG GCAGCGTCAA CCTGATCACC CGCAAGCCGA CCCGCGACCT CAGCGGCTAT CTCGACCTGA CCTACGGCAA TTACGACCGC ATCCAGCTCG ACGGCGCGAT CAGCGGGCCG CTCGATGGCA AGGGCGACGT CCGCGCCCGC ATCGCCTTCC AGAAGGTCAA GCATGACGGC TATGGCCGCA ACGTGACCCT CAACGAGGAC GTCAGCGACC AGGACAGCTG GGCGGTGCGC GGCATCCTCC AGGTCGATCC CGCCGCCAAT GTCGATATCA CCCTCTCCGC CGACTATGCG CGCGAGGACG ACCATAATTA TCCGTTCAAC GGCTTCGGTC CCTATCGCTC CGACGTGCCG ATGCCGGGCC TGCTGCTCGG CGGCACGCTG CTGCCCAACA GCCGCGACGT GACGACCGAG GTGCCGACCC GCAACGACCG CACCTTCTGG GGCCTGTCGG GCACGATCGG CGTCGATCTG GGTGGGGGCC TGCGCTTCCA GTCGATCACC GGCTATCGCA AGTCGCGCCG CGCCAACATC AACGATCCCG AGACGACCTC CTATGCGGTG TTCTCGCCGA CCCTGACGGC GGAGAACGCC CGGCAATTCT CGCAGGAGCT CCAGCTCCTC TACACCAGCG ACCGGCTCAA CGGCGTCGCC GGCCTGTTCT ACTATGACGA ATCGCTCAAG GCGGAGCTCG ACCTCGGCTT CCCGGTGATC GGCGCCGCCC TCGGCTTCCC GGCCGCTGAC TATCATGAGG ACGGCACGAT CGACATCAAG GCCTATGCGG CCTTCACCCA GTGGACCTAT GAGGTGGTCG ACCATCTCCG GCTGACCGCC GGCGTCCGCT ACAGCGACGA GAAGCGCCGC TCGAACGGCA CCTTCACCAT CTTCAGCTTC ATGCCGCCGC CGAACGCCGC CAACGTCGTC GTGCCCGTCC ATGTCGACAA GAGCTGGCAC GCGCTGACGC CGAAGTTCAG CATCGACTAC AAGCCGGTCG AGAATGTGAT GCTCTATGCG TCGGCGACGC GCGGCTTCAA GAGCGGCGTG CTGCTGAGCG GCAACCCCAA TCCGCCGGTC AATCCCGAAT ATATCTGGTC CTATGAGGCG GGCATCAAGT CGAGCTTCCT CGACAACCGG GTCCAGCTCA ACGCCGCGGC CTTCTACTAC GACTTCAAGG ACCTGCAGGT TAACCGGATC ATCAACGTCT CGATCGTCAC CGAGAATGCG GCGGCGGCGC GGGTCAAGGG GGCCGAGGTC GAGCTGCGGG CGCGGCCGGT CGAGGGCGTC ACGCTCAACG CCGACGCCAC CTATCTCGAC GCCACCTTCC GCAAATACAG CACCAAGCAT CCGGCCCGTC CCGAACTCGG CCTGCTCGAC CTGTCGGGCA ACCGGCTCGC CAACGCGCCG AAATGGTCGC TCAACGCGGG CGCGGAGTTC GACCTGCCGA TCGGCGTGCC CGGCCGGCTG TCGGCGCGCG GCGACGTCGC CTGGACCGGC AAGGTCTATT TCACCGAGTT CAACGAGAAT CTCCTCTCGC AGGACGCGGT GGCGACGGTC GACGCCTCGC TGCAATATGA GAGCGAAGAC GGCCACTGGC GCGCCAGCCT GTTCGGCAAG AACCTGACCA ACCGCAAGAT CGTGGCGAAC AAGTTCATCG CCGCGCAGAC GACCGGCTTC GCGCTCAATG GCGGCTTCAA GCCGCCGCGC ACCTACGGCC TGCGGGTCGG CTACCGGCTG TAG
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Protein sequence | MRLYHLFAAA AVAAIATGSA QAQTAPAADA DNIGLEEIVV TAQKRSEKLQ DIPVTVTALG AEALERRQVL SVSDLQSIAP GVSVGQHAGY NRLFIRGIGL TSISSGQDPS VSFQVDGVVI GRPSAQLASF FDLERVEVLR GPQGTLYGRN ATGGSVNLIT RKPTRDLSGY LDLTYGNYDR IQLDGAISGP LDGKGDVRAR IAFQKVKHDG YGRNVTLNED VSDQDSWAVR GILQVDPAAN VDITLSADYA REDDHNYPFN GFGPYRSDVP MPGLLLGGTL LPNSRDVTTE VPTRNDRTFW GLSGTIGVDL GGGLRFQSIT GYRKSRRANI NDPETTSYAV FSPTLTAENA RQFSQELQLL YTSDRLNGVA GLFYYDESLK AELDLGFPVI GAALGFPAAD YHEDGTIDIK AYAAFTQWTY EVVDHLRLTA GVRYSDEKRR SNGTFTIFSF MPPPNAANVV VPVHVDKSWH ALTPKFSIDY KPVENVMLYA SATRGFKSGV LLSGNPNPPV NPEYIWSYEA GIKSSFLDNR VQLNAAAFYY DFKDLQVNRI INVSIVTENA AAARVKGAEV ELRARPVEGV TLNADATYLD ATFRKYSTKH PARPELGLLD LSGNRLANAP KWSLNAGAEF DLPIGVPGRL SARGDVAWTG KVYFTEFNEN LLSQDAVATV DASLQYESED GHWRASLFGK NLTNRKIVAN KFIAAQTTGF ALNGGFKPPR TYGLRVGYRL
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