| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2300 |
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| Symbol | |
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| ID | 5198364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2556819 |
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| End bp | 2559011 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640581846 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001262797 |
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| Protein GI | 148555215 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000000740519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000350666 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAATCG AAATTCGTCC TGTTCGGATC ATGTCCGCGC TGGCGGCGGG CGCGGCGCTC
TGGCAGGTGC CGGCGCTGGC GGCCGCGCAG ACCGCCGCCG CCGTCGACGA TTCGGGCATC
GCCGAGATCA TCGTGACGGC GCAGCGCCGC TCCGAGAGCC TGGAGAACGT GCCGATCTCG
ATCACCGCCG CGACCGCCGA CATGCTGACG GCGCGCGGTG TCAATTCGAT GCGCGACATG
ATCGCCGCGG CGCCCAGCGT CACCCTGGTC ACCGTCGCCG GCTATCTGCA GCCGCGCATC
CGCGGCATCG GCAACGCGGC GGTCGGGCCG GGCTTCGAGG GCGGCGTCGC GGTCTATGTC
GACGGCGTCT ACCAGGCGGC GCCGCAGGCC AATCTGTTCT CGCTCGCCAA TATCGAGCGG
GTCGAGATTC TGAAGGGGCC GCAGGGCACG CTGTTCGGCC GCAACACGAC CGGCGGCCTG
ATCCAGGTGA TCACCCGCCA GCCGAGCCAC GATTTCGGCG GCACCGCGTC GGTGACCGCC
GCCAACTACC AGGATTTCAC CGGCGATATC TACGTCACCG GCGGCCTGTC CGACACGGTG
GCGATGAACT TCGCCGGCCA TGCCGAGGTG CAGGGCAAGG GCTGGGGCGA CAATATCGTC
ACCGGCAAGG ACGCCTATCG CACCTATCAC GACGTCGCCG TCCGCTCGTC GCTGCTGTTC
GAGCCGAGCG ACGCGACCAA GGTCCGCATC ACCGGCGACT ATCTCGACAA CCGCAACAAC
ATCAGCCCGT CGACCGTGCT GGCGCCGGGG ACCGGCTTCC CTTTTCCGGG CCTGATCCTC
CCCACCAGGA CCTGGGACAC CGCGAGCGAC GTCCAGCCGA ACAGCCGCGT CAAGAGCGGC
GGCGCCACCG CGCAGATCAC CCAGGATCTC GGCTTCGCCT CGCTGGTCAG CATCAGCGCC
TATCGCAAGG CGCGCTACAG CCTCGTCTTC GACGGCGACG TCAGCAACCT CAAGCTGGTG
TCGATCGACA TCGGCCAGTC GGACCGCCAG TTCAGCCAGG AGGTCCAGCT CACCTCCAAC
CCGGATTCGA AGATAAGCTG GGTGCTCGGC GCCTTCTACT TCAACGCGGC GGGCCGGTTC
GATCCCAACG GCGTGGCGCT GGACGGCTTC GTCAGGCCGT CGAGCCCGCT GGGCCCGGTC
ACCGGCAGCT TCAGCTATGC CCGGCTGGGG ACGCGTTCGC TGGCCGGCTA TGCGCAGGCG
ACCGCGCCGA TCACCGACGC GACCAGGCTG ACCCTCGGCA TCCGCTACAC GCGCGAGCGC
AAGAGCCTCA CCGACATCGA GAGCTTCACC ACCTTCGCGG CGCTGCCGGC CCCGGTGCCC
GGCGCGCCGG TCGCGGACCG CAGCGTCCGC TACAACCGGC CGACCTGGCG GGTCGCGGTC
GACCATCGCT TCTCGCCGCA GCTGCTGGTC TATGCCTCCT ATAATCGCGG CTTCAAGAGC
GGCGGCTTCA ACGGCCAGTT CCCGACCGAC GCCGCCTATC TGCCCGAACG GCTCGACGCC
TATGAGGTCG GCGCCAAGGC CAATCTGTTC GACCGCCACC TGCGGATCGA CGTCGCCGGC
TTCTATTACG ACTATAGCAA CATCCAGGTG TCGAAGTTCA TCGGATCGCA GCAGAGCTTC
TACAACGGCG CGGCGGCGCG GGTGTACGGC CTCGACGTCG ATTTCGAGGC GAAGCTGAGC
AGCCGGCTGT CGCTGTCGGG CGGCATGACC CTGCTCCACG ACCGCTTCAC CCGCTTCCCC
AATGCGGTGA TCTCGACCCA GGTGCCGACC GGGATCGTCA TCACCACCGG ATCGGCCAAG
GGCAACCGCC TGCCGGTGAC CGCCGATTTC AGCGCGACGC TGACCGCGAC CCACCGCACG
CCGCTGAGCT TCGCCGACCT GCTGGTCGAC CTCAGCTACA CCTATAATGA CGGCTATTTC
ACCCAGCCCG ACAATATCCT GCGCCAGCCG TCCTACAACC TGCTGGCGGC GGGCGCGCGG
CTCGACTTCC CCAACGGGGT CAACGCCCGG CTGTGGATGC GCAACATCCT GAACGAGAAG
ATATTCAACA CGCTCCAGGC GGGGACGTTC GACAGCAACG CCTCCTATCA GGCGCCCCGC
ACCTACGGCA TCACCCTCGG AGTGAAATTC TGA
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| Protein sequence | MAIEIRPVRI MSALAAGAAL WQVPALAAAQ TAAAVDDSGI AEIIVTAQRR SESLENVPIS
ITAATADMLT ARGVNSMRDM IAAAPSVTLV TVAGYLQPRI RGIGNAAVGP GFEGGVAVYV
DGVYQAAPQA NLFSLANIER VEILKGPQGT LFGRNTTGGL IQVITRQPSH DFGGTASVTA
ANYQDFTGDI YVTGGLSDTV AMNFAGHAEV QGKGWGDNIV TGKDAYRTYH DVAVRSSLLF
EPSDATKVRI TGDYLDNRNN ISPSTVLAPG TGFPFPGLIL PTRTWDTASD VQPNSRVKSG
GATAQITQDL GFASLVSISA YRKARYSLVF DGDVSNLKLV SIDIGQSDRQ FSQEVQLTSN
PDSKISWVLG AFYFNAAGRF DPNGVALDGF VRPSSPLGPV TGSFSYARLG TRSLAGYAQA
TAPITDATRL TLGIRYTRER KSLTDIESFT TFAALPAPVP GAPVADRSVR YNRPTWRVAV
DHRFSPQLLV YASYNRGFKS GGFNGQFPTD AAYLPERLDA YEVGAKANLF DRHLRIDVAG
FYYDYSNIQV SKFIGSQQSF YNGAAARVYG LDVDFEAKLS SRLSLSGGMT LLHDRFTRFP
NAVISTQVPT GIVITTGSAK GNRLPVTADF SATLTATHRT PLSFADLLVD LSYTYNDGYF
TQPDNILRQP SYNLLAAGAR LDFPNGVNAR LWMRNILNEK IFNTLQAGTF DSNASYQAPR
TYGITLGVKF
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