Gene Swit_2297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2297 
Symbol 
ID5198361 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2552936 
End bp2553853 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content69% 
IMG OID640581843 
ProductTetR family transcriptional regulator 
Protein accessionYP_001262794 
Protein GI148555212 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0935054 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00257224 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGCAATATA CGGTTCGGAC AAAATGGCTT CCGCCCGCCG AGAGCCCGGA TTTCCGACCG 
TTCCGGGTGG CGTTCGCATG GCCAATGGAC TACATCGTCA ATCCGAAAGG GCTCATTCCG
ACCCTTTCGC CCATGGAGAG CATCATCTTG GAGGACGGAG CGCCGCGCCC GGAATCGAGC
GAAGCCGCCA AGCCGGCCCG GCGCAAGGCG CGGACCGCCC CCCGCACGTC GCGGCTGAAC
CCGGTCCAGC TCGCCCGCAG GGTCGAGGTG GGCGAGCAGC GGCGCGCCAA GTCGCGCAAC
AAGCTGATGC AGGCGGCCTA CCGCCTGTTC GCCGTGCACG GCGCCGAAGC GCCGACGATC
GACGACGTGA TCGCCGAGGC GAAGGTCGCG CGCGGCACCT TCTACAATCA TTTCAAGTCG
CGCGACGAGC TGTTCCGCGC GGTCGGCAAC GACGTCTCCT TCGCGATCAA CTCGGTCATC
TCGGGCGCGA TCGACGAGAT GGAGGACCCG ATCGAGCGGA TCATCCTCGC CTTCCGGCTG
TTCATCCGCT TCGCGGTGTC CGATGCGGCG CGCGGCTGGA TCCTGCTGCG CACCATGCCG
CTCGCCGGGC CGCTCAACGC CGGCGCCAAG GAGTTCATCG CCGCCGAGTT CGAGGCGGCG
TTCGGGAGCG GCCGGCTGCG CGCGATGCCG ATGGCCGTCG CGATCGACAT GGGCCTGGGC
ATGCAGATCA TGACGATCCA CCGGGTGCTG GTCGAGAAGG TCGGCAACGA CCATATCGAC
CTCGCCGCCG GGGAGATGGC GGTGGCGCTG GGCCTCGACC CGGCCGAGGC GCGGGCGCTG
GCCTCCATCC CGATCGAGGA GGACGATGCG CGGGCCGCGG CCGCGCGGGC CTATTCCTTC
CCGGTGGAGA AGAGCTGA
 
Protein sequence
MQYTVRTKWL PPAESPDFRP FRVAFAWPMD YIVNPKGLIP TLSPMESIIL EDGAPRPESS 
EAAKPARRKA RTAPRTSRLN PVQLARRVEV GEQRRAKSRN KLMQAAYRLF AVHGAEAPTI
DDVIAEAKVA RGTFYNHFKS RDELFRAVGN DVSFAINSVI SGAIDEMEDP IERIILAFRL
FIRFAVSDAA RGWILLRTMP LAGPLNAGAK EFIAAEFEAA FGSGRLRAMP MAVAIDMGLG
MQIMTIHRVL VEKVGNDHID LAAGEMAVAL GLDPAEARAL ASIPIEEDDA RAAAARAYSF
PVEKS