Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2291 |
Symbol | |
ID | 5198473 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2546255 |
End bp | 2549023 |
Gene Length | 2769 bp |
Protein Length | 922 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640581837 |
Product | TonB-dependent receptor |
Protein accession | YP_001262788 |
Protein GI | 148555206 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.152669 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0285161 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCAGA AGAATCTTCG GGAAACGTTC CTGGCGGGGG CGGCGATCGC CGCGCTGCTG GCGTCGCCCG CCATGGCGCA GGATGCGCCG GCCGGGGAGG GCGCGCCGTC GGGCGACATC GTCGTCACCG GCACGCGCGT CGTCCGCGAC GGCTATCTGG CGCCGACCCC GACCACCGTC GTCGGCGTGG CCGAGATCCA GAAATCGGCG CAGGTCCAGC TCGCCGACTA TATCAACCAG CTTCCACAGC TCTCCAATTC GCTGTCGCCG ACCACCAACC GCAACGGTTC GTCGTCGGGG GCGAGCTTCC TCAACCTGCG CGGCCTGGGG GTCAATCGCA CGCTGGTGCT GCTCGACGGC CGCCGCGTCA CCCCGTCCTC GCTGACCGGC AACGTCGATT TCGCGCTGCT GCCGCAGGCG CTGGTCCAGC GGGTCGACAT CGTCACCGGC GGCGCCTCGT CGGCCTGGGG CTCGGATGCG GTCGCGGGCG TCGTCAACCT GGTGCTCGAC CGCGAGTTCA AGGGGCTGAA GGGCGAGATC GTCAGCGGCA TTTCGGACCA TGGCGACGGC GGCCAGTTCA AGGCCAATCT CAGCTTCGGC ACGCCCTTCG CCGACGGGCG CGGCCATTTC ATCGCCAGCG TCGAGCATAA CGAGCTCAAG GATGTTCCGC GCGCCGGATC GCGCGACTGG TACAAGGGCT GGAACATCGT CAACAACCCC GCCTATGTCG CGGGCGGCTC CGCGCCGATG CGGCTGCTGG TGCCCAATGT CGGCCTGTCG CGCAGCACGC CGGGCGGCCT GATCTCGGCG GGTCCGCTGG CAGGCACGCA GTTCCTGGCG GGCGGGGAGC CGGCGCGGTT CAATCCCGGC TCGGTCAGCG GCCTGCTCTC CTATGGCGGC GACGGCTATC TCGCTGGCCA GGACCAGCAG CTCCTGACCC CGGTCAACTG GGACACCGTC TACGCCCGCG CGGAATATGA GGTCTCGCCG GCCTTCACCC TGTTCGCCGA CGGCAATTAC GCCAAGGCCG ACTCCTCCTA TTCGGTGCGC CTCTACCAGC GCGACGGCAA CATCACGATC AGCCGGCAGA ACGCCTATCT CGATCCCGTC ACCGCCGCGC GGATGGACGC GGCCGGGCTG ACCAGCTTCC AGCTCGGCAA GCTCCACACC GACCTGCCGG TCGCCAAGGT CAAGAGCAGT CGCGAGCTGA TCCGCGGCGT CGTCGGCGCG ACCGGTGATC TCGGCGGAAG CTGGTCCTAC GACGCTTATT ATCAATATGG CCGGACGCTG TTCGACACCG CCGCCGTCAA CAACGTCATC ACCGCCAACT ACAACAACGC GGTCGACGCG GTCGACCAGG GGCTGATCCA GACCGGCGTC GCCAACGGCA ACATCGTCTG CCGGTCGAGC CTGACAAGTC CCGGCAACGG TTGCGTGCCG TTCGACGTGT TCGGCACCGG CGGCGTCTCG CAAGCGGCGC AGGACTATAT CTTCGGCGAG GCGACCCAGA GCACCGTCAT CAAGCAGCAG GTCGCCGCCG CCAACCTGCG CGGCGAGCCG TTCAGCCTGT GGGCGGGGCC GGTCTCGGTC GCGCTCGGCG TCGAATGGCG CAAGGAGCAG TATAACGCCC GGCAGCCGGA CCCGATCTCG CTGACCAACG GCTTCTTCCT CGGCAACTAC AAGCCGTCGG CGGGCTCCTT CAACGTCCGC GAAGGCTATT TCGAGGCGGT GGTGCCGCTG CTCGTCGACC TGCCCTTCGC CAAGCGGGTC GAGTTCGACG GCGCGGTCCG CTATACCGAC TACAGCACCA GCGGCAGCAT CGCGACGTGG AAGGCGGGGC TGTCGTGGGA GGTCGACGAC CAGCTCCGGC TGCGCGGCAC CATCTCCCGC GACATCCGCG CGCCCAACCT GAACGAGCTG TTCCTCGCCA GCGCGTCGAC CAATTTCGCG ATCGTCGATC CGGTCGCGGG CGGCAATTAT TCGGTGCGCC GCGTCGTTGC CGGCAATCGC AACCTCGGCC CCGAGCGGGC GATCACCAAG TCGGCGGGCA TCGTCTACCG GCCGAACTGG TTCCCCGGCT TCTCCGCGTC GGTCGACGTC TACGACATCA AGATCGACGA CGCGATCTTC ACCCCCGACG CGCAGGTCGT GATCGACCAG TGCCAGGCGG GCGTCCAGGC GCTCTGCGCC GCGATCAGCC GCGGCGCCGG CAACCTCGTC ACCGAGATCC GCGTGCTGCC GCAGAACGTC CTGTCGGAAC GCGCGCGGGG CCTCGACATC GACGCTTCCT ATCGCCGCCC GCTCGGCGAG GGGCAGCTCT CGATCCGCGC GCTCGCCAGC CATGTGTTCA AGCGCGAAGT CGACTCCTTC GGCACCTTCC TGCGTTATGA CGGCGTGACC GGCGACGGGC TCGGCCTGCC CAAATGGCGC GCGCAGACCA CCGTCACCTA CGACCAGGGC GGCTTCTCGA CGACGCTGAC CAGCCGCTAT GTCAGCGGCG GCGTCCTCAA CAAGGCGTGG GGCCCGGCCG ACATCGACGA CAACAGCACC GCGAGCCGGA CCTATTTCGA CTTGTCGGCG AGCTACACCT TCTCGCGCAC CCACGGGACC GAGATGCAGA TCTTCGGGGT GGTCCAGAAC CTGTTCGACA AGGACCCGGC GGTGTCGGTC GCGACCAGCG GCAACGCCTT CACCAGCACC GGCACCAATG CCAGCTTCTT CGACACGATC GGCCGGCAGT TCCGCGTCGG CGTCCGGTTC CGCCGGTGA
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Protein sequence | MRQKNLRETF LAGAAIAALL ASPAMAQDAP AGEGAPSGDI VVTGTRVVRD GYLAPTPTTV VGVAEIQKSA QVQLADYINQ LPQLSNSLSP TTNRNGSSSG ASFLNLRGLG VNRTLVLLDG RRVTPSSLTG NVDFALLPQA LVQRVDIVTG GASSAWGSDA VAGVVNLVLD REFKGLKGEI VSGISDHGDG GQFKANLSFG TPFADGRGHF IASVEHNELK DVPRAGSRDW YKGWNIVNNP AYVAGGSAPM RLLVPNVGLS RSTPGGLISA GPLAGTQFLA GGEPARFNPG SVSGLLSYGG DGYLAGQDQQ LLTPVNWDTV YARAEYEVSP AFTLFADGNY AKADSSYSVR LYQRDGNITI SRQNAYLDPV TAARMDAAGL TSFQLGKLHT DLPVAKVKSS RELIRGVVGA TGDLGGSWSY DAYYQYGRTL FDTAAVNNVI TANYNNAVDA VDQGLIQTGV ANGNIVCRSS LTSPGNGCVP FDVFGTGGVS QAAQDYIFGE ATQSTVIKQQ VAAANLRGEP FSLWAGPVSV ALGVEWRKEQ YNARQPDPIS LTNGFFLGNY KPSAGSFNVR EGYFEAVVPL LVDLPFAKRV EFDGAVRYTD YSTSGSIATW KAGLSWEVDD QLRLRGTISR DIRAPNLNEL FLASASTNFA IVDPVAGGNY SVRRVVAGNR NLGPERAITK SAGIVYRPNW FPGFSASVDV YDIKIDDAIF TPDAQVVIDQ CQAGVQALCA AISRGAGNLV TEIRVLPQNV LSERARGLDI DASYRRPLGE GQLSIRALAS HVFKREVDSF GTFLRYDGVT GDGLGLPKWR AQTTVTYDQG GFSTTLTSRY VSGGVLNKAW GPADIDDNST ASRTYFDLSA SYTFSRTHGT EMQIFGVVQN LFDKDPAVSV ATSGNAFTST GTNASFFDTI GRQFRVGVRF RR
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