Gene Swit_2291 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2291 
Symbol 
ID5198473 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2546255 
End bp2549023 
Gene Length2769 bp 
Protein Length922 aa 
Translation table11 
GC content68% 
IMG OID640581837 
ProductTonB-dependent receptor 
Protein accessionYP_001262788 
Protein GI148555206 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4206] Outer membrane cobalamin receptor protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.152669 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0285161 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCAGA AGAATCTTCG GGAAACGTTC CTGGCGGGGG CGGCGATCGC CGCGCTGCTG 
GCGTCGCCCG CCATGGCGCA GGATGCGCCG GCCGGGGAGG GCGCGCCGTC GGGCGACATC
GTCGTCACCG GCACGCGCGT CGTCCGCGAC GGCTATCTGG CGCCGACCCC GACCACCGTC
GTCGGCGTGG CCGAGATCCA GAAATCGGCG CAGGTCCAGC TCGCCGACTA TATCAACCAG
CTTCCACAGC TCTCCAATTC GCTGTCGCCG ACCACCAACC GCAACGGTTC GTCGTCGGGG
GCGAGCTTCC TCAACCTGCG CGGCCTGGGG GTCAATCGCA CGCTGGTGCT GCTCGACGGC
CGCCGCGTCA CCCCGTCCTC GCTGACCGGC AACGTCGATT TCGCGCTGCT GCCGCAGGCG
CTGGTCCAGC GGGTCGACAT CGTCACCGGC GGCGCCTCGT CGGCCTGGGG CTCGGATGCG
GTCGCGGGCG TCGTCAACCT GGTGCTCGAC CGCGAGTTCA AGGGGCTGAA GGGCGAGATC
GTCAGCGGCA TTTCGGACCA TGGCGACGGC GGCCAGTTCA AGGCCAATCT CAGCTTCGGC
ACGCCCTTCG CCGACGGGCG CGGCCATTTC ATCGCCAGCG TCGAGCATAA CGAGCTCAAG
GATGTTCCGC GCGCCGGATC GCGCGACTGG TACAAGGGCT GGAACATCGT CAACAACCCC
GCCTATGTCG CGGGCGGCTC CGCGCCGATG CGGCTGCTGG TGCCCAATGT CGGCCTGTCG
CGCAGCACGC CGGGCGGCCT GATCTCGGCG GGTCCGCTGG CAGGCACGCA GTTCCTGGCG
GGCGGGGAGC CGGCGCGGTT CAATCCCGGC TCGGTCAGCG GCCTGCTCTC CTATGGCGGC
GACGGCTATC TCGCTGGCCA GGACCAGCAG CTCCTGACCC CGGTCAACTG GGACACCGTC
TACGCCCGCG CGGAATATGA GGTCTCGCCG GCCTTCACCC TGTTCGCCGA CGGCAATTAC
GCCAAGGCCG ACTCCTCCTA TTCGGTGCGC CTCTACCAGC GCGACGGCAA CATCACGATC
AGCCGGCAGA ACGCCTATCT CGATCCCGTC ACCGCCGCGC GGATGGACGC GGCCGGGCTG
ACCAGCTTCC AGCTCGGCAA GCTCCACACC GACCTGCCGG TCGCCAAGGT CAAGAGCAGT
CGCGAGCTGA TCCGCGGCGT CGTCGGCGCG ACCGGTGATC TCGGCGGAAG CTGGTCCTAC
GACGCTTATT ATCAATATGG CCGGACGCTG TTCGACACCG CCGCCGTCAA CAACGTCATC
ACCGCCAACT ACAACAACGC GGTCGACGCG GTCGACCAGG GGCTGATCCA GACCGGCGTC
GCCAACGGCA ACATCGTCTG CCGGTCGAGC CTGACAAGTC CCGGCAACGG TTGCGTGCCG
TTCGACGTGT TCGGCACCGG CGGCGTCTCG CAAGCGGCGC AGGACTATAT CTTCGGCGAG
GCGACCCAGA GCACCGTCAT CAAGCAGCAG GTCGCCGCCG CCAACCTGCG CGGCGAGCCG
TTCAGCCTGT GGGCGGGGCC GGTCTCGGTC GCGCTCGGCG TCGAATGGCG CAAGGAGCAG
TATAACGCCC GGCAGCCGGA CCCGATCTCG CTGACCAACG GCTTCTTCCT CGGCAACTAC
AAGCCGTCGG CGGGCTCCTT CAACGTCCGC GAAGGCTATT TCGAGGCGGT GGTGCCGCTG
CTCGTCGACC TGCCCTTCGC CAAGCGGGTC GAGTTCGACG GCGCGGTCCG CTATACCGAC
TACAGCACCA GCGGCAGCAT CGCGACGTGG AAGGCGGGGC TGTCGTGGGA GGTCGACGAC
CAGCTCCGGC TGCGCGGCAC CATCTCCCGC GACATCCGCG CGCCCAACCT GAACGAGCTG
TTCCTCGCCA GCGCGTCGAC CAATTTCGCG ATCGTCGATC CGGTCGCGGG CGGCAATTAT
TCGGTGCGCC GCGTCGTTGC CGGCAATCGC AACCTCGGCC CCGAGCGGGC GATCACCAAG
TCGGCGGGCA TCGTCTACCG GCCGAACTGG TTCCCCGGCT TCTCCGCGTC GGTCGACGTC
TACGACATCA AGATCGACGA CGCGATCTTC ACCCCCGACG CGCAGGTCGT GATCGACCAG
TGCCAGGCGG GCGTCCAGGC GCTCTGCGCC GCGATCAGCC GCGGCGCCGG CAACCTCGTC
ACCGAGATCC GCGTGCTGCC GCAGAACGTC CTGTCGGAAC GCGCGCGGGG CCTCGACATC
GACGCTTCCT ATCGCCGCCC GCTCGGCGAG GGGCAGCTCT CGATCCGCGC GCTCGCCAGC
CATGTGTTCA AGCGCGAAGT CGACTCCTTC GGCACCTTCC TGCGTTATGA CGGCGTGACC
GGCGACGGGC TCGGCCTGCC CAAATGGCGC GCGCAGACCA CCGTCACCTA CGACCAGGGC
GGCTTCTCGA CGACGCTGAC CAGCCGCTAT GTCAGCGGCG GCGTCCTCAA CAAGGCGTGG
GGCCCGGCCG ACATCGACGA CAACAGCACC GCGAGCCGGA CCTATTTCGA CTTGTCGGCG
AGCTACACCT TCTCGCGCAC CCACGGGACC GAGATGCAGA TCTTCGGGGT GGTCCAGAAC
CTGTTCGACA AGGACCCGGC GGTGTCGGTC GCGACCAGCG GCAACGCCTT CACCAGCACC
GGCACCAATG CCAGCTTCTT CGACACGATC GGCCGGCAGT TCCGCGTCGG CGTCCGGTTC
CGCCGGTGA
 
Protein sequence
MRQKNLRETF LAGAAIAALL ASPAMAQDAP AGEGAPSGDI VVTGTRVVRD GYLAPTPTTV 
VGVAEIQKSA QVQLADYINQ LPQLSNSLSP TTNRNGSSSG ASFLNLRGLG VNRTLVLLDG
RRVTPSSLTG NVDFALLPQA LVQRVDIVTG GASSAWGSDA VAGVVNLVLD REFKGLKGEI
VSGISDHGDG GQFKANLSFG TPFADGRGHF IASVEHNELK DVPRAGSRDW YKGWNIVNNP
AYVAGGSAPM RLLVPNVGLS RSTPGGLISA GPLAGTQFLA GGEPARFNPG SVSGLLSYGG
DGYLAGQDQQ LLTPVNWDTV YARAEYEVSP AFTLFADGNY AKADSSYSVR LYQRDGNITI
SRQNAYLDPV TAARMDAAGL TSFQLGKLHT DLPVAKVKSS RELIRGVVGA TGDLGGSWSY
DAYYQYGRTL FDTAAVNNVI TANYNNAVDA VDQGLIQTGV ANGNIVCRSS LTSPGNGCVP
FDVFGTGGVS QAAQDYIFGE ATQSTVIKQQ VAAANLRGEP FSLWAGPVSV ALGVEWRKEQ
YNARQPDPIS LTNGFFLGNY KPSAGSFNVR EGYFEAVVPL LVDLPFAKRV EFDGAVRYTD
YSTSGSIATW KAGLSWEVDD QLRLRGTISR DIRAPNLNEL FLASASTNFA IVDPVAGGNY
SVRRVVAGNR NLGPERAITK SAGIVYRPNW FPGFSASVDV YDIKIDDAIF TPDAQVVIDQ
CQAGVQALCA AISRGAGNLV TEIRVLPQNV LSERARGLDI DASYRRPLGE GQLSIRALAS
HVFKREVDSF GTFLRYDGVT GDGLGLPKWR AQTTVTYDQG GFSTTLTSRY VSGGVLNKAW
GPADIDDNST ASRTYFDLSA SYTFSRTHGT EMQIFGVVQN LFDKDPAVSV ATSGNAFTST
GTNASFFDTI GRQFRVGVRF RR