| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2271 |
|---|
| Symbol | |
|---|
| ID | 5199776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2527211 |
|---|
| End bp | 2528542 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640581817 |
|---|
| Product | Rieske (2Fe-2S) domain-containing protein |
|---|
| Protein accession | YP_001262768 |
|---|
| Protein GI | 148555186 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.516645 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.774548 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTGA AGCGCAAGGT CGACATGATC CGGGTCAATC CGCAGGACTG GCCCGACGGC
ACGCCGGCAT GGAAGGCCGA GGACCCCGAC CTCGGCTACG ACGTCATCCC GGCCGCGCGC
TACACCTCGC CCGAATTCAT GAAGCTCGAA TGGGACAAGG TCTGGACCAA GGTCTGGCTG
CTCGGCGGCC GGTCGTGCGA CCTGAAGGAG CCGGGCGACT ATATCTGCAC CGACATCGGC
AAGGAGAGCG TGCTGATCGT CCGCCAGCAG GACGGATCGG TCCGCGCCTT TCCCAATGTC
TGCCTGCACC GCGGCAACAG GCTGCGTCCC GAAGGGCTCG GCAATGCCGA GGATTTCCGG
TGCATGTACC ATCACTGGAC CTATGGCCTC GACGGCTGCA TCGCCCGCAT CCCCGATCTC
GACACCTTCC CGCAGGGCGG ACCTCCGGGG ATGCGGCTGC CGGCCTACCC CTGCGCCGAA
TGGGGCAGCT TCGTCTGGTT CTCGCTCAAC CCCGACGTCG GTCCGCTGGA GGACTATCTC
GCGCCGATGC CGCAGCATCT CGGCCCCTAT CATATGGAGC GGATGGCGTG GGTCCGCGAC
ATCACCGTCG AATGGGACTG CAACTGGAAG GCAAGCGTCG ACGCGTTCAG CGAGGTCTAT
CACGTCCAGG GCATCCACCC GCAGCTGCAA TGGTATCTCG ACGACACCAA CGCCCAGATC
GACGTCTATG AGCGGCACAG CCGCTACCTC GTCCCCTTCG CCTGCGTGTC GGGCCGGGTC
GCGCTGCCCT CCTCGATCCC GCCGGCGATC CACGACATCA TGGTCAAGGC CGGGATGGAC
CCCGCCGACT ATGACGGCCG GGTCAGCGAC ATCCGCCGCG ACGTCCAGCT CTTCAAGCGC
GAGCACGGCG CGTCGCAGGG CAAGGATTAT TCGGCGCTCA ACGACGACCA GCTCACCGAC
GACTATCACT ACACCATCTT CCCGAACGTC TCGCTCAACG TCCATGCCGA CGACGTGATG
ATGTTCCGGC AGCGGCCGCA TCCGACCGAT CCCGACAAGA TGCTCTACGA CATCTGGATG
CTCGAGCTGG TGCCCGAGGG CGAGGAATGG CCCGAGCGGC CCCGGCACAA GCGCTTCCGC
CACGGCGAGA AGTCGATCGG CCAGGTGCTC GACCAGGACG CGTTCAACCT GCCGACCGTC
CAGAAGGGGA TGCAGTCGGA CGCCTTCCCC GGCCTGTGGA TCGGCGACCA GGAGCTGCGC
ATCCGGCACT TCCACAAGGT GCTCGACGAT CATGTCTACG GTCCGGGCGG CAAGTCCCCC
GGCGATCTCT GA
|
|---|
| Protein sequence | MDVKRKVDMI RVNPQDWPDG TPAWKAEDPD LGYDVIPAAR YTSPEFMKLE WDKVWTKVWL
LGGRSCDLKE PGDYICTDIG KESVLIVRQQ DGSVRAFPNV CLHRGNRLRP EGLGNAEDFR
CMYHHWTYGL DGCIARIPDL DTFPQGGPPG MRLPAYPCAE WGSFVWFSLN PDVGPLEDYL
APMPQHLGPY HMERMAWVRD ITVEWDCNWK ASVDAFSEVY HVQGIHPQLQ WYLDDTNAQI
DVYERHSRYL VPFACVSGRV ALPSSIPPAI HDIMVKAGMD PADYDGRVSD IRRDVQLFKR
EHGASQGKDY SALNDDQLTD DYHYTIFPNV SLNVHADDVM MFRQRPHPTD PDKMLYDIWM
LELVPEGEEW PERPRHKRFR HGEKSIGQVL DQDAFNLPTV QKGMQSDAFP GLWIGDQELR
IRHFHKVLDD HVYGPGGKSP GDL
|
|---|
| |