| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2246 |
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| Symbol | |
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| ID | 5200117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2501548 |
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| End bp | 2504247 |
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| Gene Length | 2700 bp |
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| Protein Length | 899 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640581792 |
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| Product | regulatory protein, LuxR |
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| Protein accession | YP_001262743 |
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| Protein GI | 148555161 |
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| COG category | [K] Transcription |
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| COG ID | [COG2909] ATP-dependent transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.348554 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATAGGA GCCGGCGGCG CCTGTGGCAT TATGCGGCGA TGCTGATCCG CACCAAATTG
GCGCCGCCCA ACAGGACGAT CGACCTGCTG TGGCGCGAGG CGCTGGTCGG GCGGATCACC
GGCGCGGCCG AGCGGCTGAC CGTCCTCTCC GCCCCCGCCG GCTACGGCAA GACGACCCTG
CTCAGCCAGT GCCACGCCCA GTGGCGGCGC GGGGATGTCG CGGTCGCCTG GTACAGCGTC
GACGATTCGA AGTTCGAGAG CGACCAGTTC TTCGCCTATC TGATGGCCGC GCTGCACCGC
GCCGGCCTGC CGCTGCCCTA TTCGCAGGAG GCGATCGACG CCGGCCTGCC CGGCCTCGCC
GCCGAGGCGG CCGCGCGGGC GATCGTCGTC GCGCTGGAGG CCAGCGAGGA GCCGGTCCGG
CTGATCATCG ACGACTATCA CCGCATCGCC TCGCCCGCGA CCAACCGCTT CCTCGACTAT
GTGATCGAGC GGATGCCGAA CCACGCCGCG ATCATCATGG CGATGCGCGG CATGCCCGAG
ATCGCGCTGT CGAGCCTGCG GGTCCGCGGG CAGCTCCTGC TGCTCGAACA GAACGACATC
CGCTTCTCCG ACAGCGAGGC GCTCCGTTTC CTGAGCGACC AGTCGAGCAA GGTCGACTGG
GGCGAGCTGA TCGAGCGAAC CCAGGGCTGG CCGGCCGCGC TGCAACTGCT GCGCCTGTGG
CTGGCGGGGC GCGACCAGGT CGACACGCTC GAGCACCTGA CCCGGCGGTC GAGCGACCTC
GCCGACTATC TGGCCGAGCA GGTCTTCTCC GGCCTGCCGG CCGACGTCCA GAAATTCCTG
CTCGAAACCT CGATCGCCGA GCGTATCTGC ACCGGGCTCG GCGATGCGAT CTCGGGCCGC
GACGATGGCG CCGACATGCT CGACCAGATG CGCCGCCGCA ACCTGCTGGT GACGCCGCTC
GACGACGACG GCGTCTGGTA TCGCTTCCAC CCGCTGCTGC GCGAATTCCT CTACGACATG
CTCGCGCGGG ACAGCCAGGC CCGGCTCGAC GCGCTCCATC TGCGCGCCGC CGCCTGGCTG
GCCGGGGAGA ATCTGCTGCC CGAGGCGCTG GGCCATGCCG CGCGCGTTTC CGACCGGACC
GCGGCGACCG CGATCATGGA GGCGGCTGGC GGATGGCGGA TGGCGATCCG CGGCGGCCTC
GCGCTGCTCC GTCACGTCGA CGAGATCGAT CAGGTGTCCC CGGCCGACTT CCCGCGCGTC
ACCCTCGGCC GGGTCTATTT CGCCGCCCAG AACGGCCGCC TGCCCGAGGC GCGGGCGATG
CTCGACCGGC TGCTCGCGGT GCTGCCGCTC GACCGGGTCG AGGCGACCGA CCCCGGCCTC
GCCAGCGAGA TGCTGTGCAA CGACCTCGTC GCCCATATCT ACGAGGATCG CGCGATCCCG
GCCGCCTATG GCCGCTTCCT CGAACGGCAG CTCGCGCATG AGGGGCACGA CCCGACCTTG
CGCGTGCTGC TCCACCACCT GTCCTGCCTG GCGAGCTTCG ATCGGGGCGA CGACATCTGG
TGCCGGGTCC ATGGCGAAAA GGCGCTCAAG CTCGCCCGGT CGCACCAGCT CCCGCTGCTG
GAGGTCTATG CCTATCAATA TCTGGGCCTG TCCCAGATCC GCACCGGCCG CCGGCGCGAG
GCCGAGCTCT ATTTCCGCCG CAGCTTCGAA CAGGCCAACC GCCATTTCGG CGAGGGCAGC
GCCCAGGTCG CGGTCGCGAT CTCGCTGCTC GCCTATACGC TCTATTTGTC GGGGGACCTG
TCGAGCGCGA CCGAGCTGCT CGAATCGGCG GTGCCGGTGA TCGAGGTGAG CGAGGGCTGG
CACGAGGTGT TCGTCGCCGC CTATGCGACC CAGGCCTGGC TGGCGGCGCG GACCGGCAAC
CTCGCGGCGG CCGAGCAGGT CATCCAGCGC GGCCGCGCCA CCGCCGAGCG CCGGGGCCTG
CCGCGCCTGC GCTACCAGCT CGACCTGCTG CGCGCGCGGA TATGGCTCTG CCTCGACCGG
GCCGAGCTGG CCGGGCCCCT GCTTGCCGAA CTGGGCGAGC CCTCGGCCGT GTTCCGCGAG
CGCGACCGGC GGCTGTTCTG CGACTATCGC GTCGCGCTGA CCGCCTGCTC CGTGCAACTC
GGGCGGCCTG ACGAGGCGCT GGTCGCGGCG CTGGAAGCCG ACGTCGCGGA GGCGGGATCG
GTCGCGCTCG ACATCGAGAT GGCGATCCTG CGCGCGGCCG GCGCGGTCGC GGCCGGGCGG
CGGACCGAGG CGGCGCACGC CGTCCGCCAG GCGCTGGAGG CGGCCGAGAG CGAGGGGTTG
ATCGGCATCG TCTCGCAGTT CGGCGCGCTG CTGCCGCCGG TGCTGGCGGC ATGCGAGGAG
TCGCTCCACC TGTTCGAGCC GGCGCAGCGC AGCACCGTCG CGCGGCTGCG GCAGACGACG
CCGGCCGCGC GCCGGGGCGG CACCGCGATC CCGCCCGCCG CGAGCGACAT CATCGTCACC
CCGCGCGAGA TCGACGTGCT GCGCGGGCTG GCCGACGGGC TGTCGAGCAA GGAGATGGCG
CGCAGCCTGG GCGTCGCCGA GAGCACGATC AAGACGCACC GCATCAACAT CTACCGCAAG
CTCAACGTCG CGACCCGGTC GCGCGCGATC TCGGCGGCGC GCAACCTGCG GCTGATCTGA
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| Protein sequence | MDRSRRRLWH YAAMLIRTKL APPNRTIDLL WREALVGRIT GAAERLTVLS APAGYGKTTL
LSQCHAQWRR GDVAVAWYSV DDSKFESDQF FAYLMAALHR AGLPLPYSQE AIDAGLPGLA
AEAAARAIVV ALEASEEPVR LIIDDYHRIA SPATNRFLDY VIERMPNHAA IIMAMRGMPE
IALSSLRVRG QLLLLEQNDI RFSDSEALRF LSDQSSKVDW GELIERTQGW PAALQLLRLW
LAGRDQVDTL EHLTRRSSDL ADYLAEQVFS GLPADVQKFL LETSIAERIC TGLGDAISGR
DDGADMLDQM RRRNLLVTPL DDDGVWYRFH PLLREFLYDM LARDSQARLD ALHLRAAAWL
AGENLLPEAL GHAARVSDRT AATAIMEAAG GWRMAIRGGL ALLRHVDEID QVSPADFPRV
TLGRVYFAAQ NGRLPEARAM LDRLLAVLPL DRVEATDPGL ASEMLCNDLV AHIYEDRAIP
AAYGRFLERQ LAHEGHDPTL RVLLHHLSCL ASFDRGDDIW CRVHGEKALK LARSHQLPLL
EVYAYQYLGL SQIRTGRRRE AELYFRRSFE QANRHFGEGS AQVAVAISLL AYTLYLSGDL
SSATELLESA VPVIEVSEGW HEVFVAAYAT QAWLAARTGN LAAAEQVIQR GRATAERRGL
PRLRYQLDLL RARIWLCLDR AELAGPLLAE LGEPSAVFRE RDRRLFCDYR VALTACSVQL
GRPDEALVAA LEADVAEAGS VALDIEMAIL RAAGAVAAGR RTEAAHAVRQ ALEAAESEGL
IGIVSQFGAL LPPVLAACEE SLHLFEPAQR STVARLRQTT PAARRGGTAI PPAASDIIVT
PREIDVLRGL ADGLSSKEMA RSLGVAESTI KTHRINIYRK LNVATRSRAI SAARNLRLI
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