| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2161 |
|---|
| Symbol | |
|---|
| ID | 5198580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2420968 |
|---|
| End bp | 2422113 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640581706 |
|---|
| Product | isovaleryl-CoA dehydrogenase |
|---|
| Protein accession | YP_001262658 |
|---|
| Protein GI | 148555076 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0871014 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATT TCGACTTCGC GCTGGGCGAG ATGGCGGATG CGATCCGCGA CACGACGGCG
CGCTTCGCCG CCGACCGGAT CGCCCCGCTC GCGGCGAAGA TCGACGCGGA CGACTGGTTC
CCGCGCGAGA TATGGCCCGA AATGGGCGCG CTCGGCCTGC ACGGGATCAC GGTGGACGAG
GCCGACGGCG GCCTCGGCCT CGGCTATCTC GAACATGTCG TGGCCCAGGA GGAGGTCGCC
CGCGCCTCGG CCTCGATCGG GCTGAGCTAC GGCGCCCATT CGAACCTGTG CGTCAACCAG
ATCCGCCGCT GGGCGACCGC CGAGCAGAAG GCCCGCTACC TCCCCAAGCT GATCTCGGGC
GAGCATGTCG GCAGCCTCGC CATGTCGGAG GCGGGGGCCG GCTCCGACGT CGTCTCGATG
AAGCTGCGCG CCGACCGGAA GGGCGACCGC TATATCCTCA ACGGCACCAA ATTCTGGATC
ACCAACGCGA CCTATGCGGA CACGCTGGTC GTCTACGCCA AGACCGGCGA GGGATCGCGG
GGGATCACCA CCTTCCTCAT CGAGAAGGGC TTCAAGGGCT TCTCGATCGG GCAGAAGATC
GACAAGGTCG GCATGCGCGG ATCGCCGACC GCCGAGCTGG TGTTCGACGA TTGCGAGGTG
CCCGAGGAGA ACGTCATGGG CCCGGTCGGC GGCGGCGTCG GCGTGCTGAT GTCGGGCCTC
GACTATGAGC GGACCGTGCT CGCCGGCATC CAGCTCGGCA TCATGCAGGC CTGCCTCGAC
ACCGTCCTGC CCTATGTCCG CGACCGCAAG CAGTTCGGCC AGCCGATCGG CGCCTTCCAG
CTCATGCAGG CCAAGGTCGC CGACATGTAT GTCGCGCTCA ATTCGGCGCG CGCCTATGTC
TATGCGGTGG CGAAGAACTG CGATGCCGGC CGGACGACCC GCTTCGACGC GGCCGGCGCG
ATCCTGCTCG CCAGCGAGAA TGCGGTGAAG GTCGCCAACG AGGCGGTCCA GGCACTGGGC
GGCGCGGGCT ACACCAAGGA CTGGCCGGTC GAACGCTATA TGCGCGACGC CAAGCTGCTC
GACATCGGCG CGGGCACCAA CGAGATCCGC CGCATGCTGA TCGGCCGGGA AGTGATCGGG
GCATGA
|
|---|
| Protein sequence | MADFDFALGE MADAIRDTTA RFAADRIAPL AAKIDADDWF PREIWPEMGA LGLHGITVDE
ADGGLGLGYL EHVVAQEEVA RASASIGLSY GAHSNLCVNQ IRRWATAEQK ARYLPKLISG
EHVGSLAMSE AGAGSDVVSM KLRADRKGDR YILNGTKFWI TNATYADTLV VYAKTGEGSR
GITTFLIEKG FKGFSIGQKI DKVGMRGSPT AELVFDDCEV PEENVMGPVG GGVGVLMSGL
DYERTVLAGI QLGIMQACLD TVLPYVRDRK QFGQPIGAFQ LMQAKVADMY VALNSARAYV
YAVAKNCDAG RTTRFDAAGA ILLASENAVK VANEAVQALG GAGYTKDWPV ERYMRDAKLL
DIGAGTNEIR RMLIGREVIG A
|
|---|
| |