| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2152 |
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| Symbol | |
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| ID | 5197851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2412849 |
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| End bp | 2414360 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640581697 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001262649 |
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| Protein GI | 148555067 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGATGG ACGAACGCCT TGCGAACGCC GCGCGCCCCG CCCTGGGGCT GGGCCTGCTG
CTGCTGTCCG CCTGCAATGC GGGGCCGGAC TATCGGCCGC CGTCGGTGTC CGACCTGAAG
ATTCCCGACC AGTTCCAGGC GTCGTCGACG ATCGCCGCCG AACAGGACAT GGTCGACCTG
GCCCGCTGGT GGGACAGCTT CGAGGACCCG ATCCTCACCC AGCTCATCGA TCGCGCCTTC
GCCGGCAATC TCGACGTCGA CGCCGCCGCC GCCCGGCTGC GCCAGGCGCG CGCCACGCTG
CGCGGCACCC AGGGGCAGGC GCTGCCGACC GCCGGGGCCA GCGGTTCGGT CACCCGCAGC
GTCGGCGCCG ACAGCCGCAC GATCATCGAT CCCTCGACCG GCCAGACGAT CGGCAGCGGC
GGCGACACCA CCGTCTATCG CGGCGGCTTC GACGTCGCCT GGGAAGCCGA CCTGTTCGGC
GGCATCCGCC GATCGATCCA GGCCGCCCGC GCCACCGCCG AGGCGCGCGA GGCCGACCTG
CGCTTCACCC AGGCGAGCAT CGCGTCGGAG GTCGGGCTCA ACTATGTCCA GGCGCGCCTC
GCCCAGAGCC GGCTCAGGAT CGCGCGCGAG AACCTCGCGG CGCAGGACGA GACCTTCGAG
CTGGTCGGCT GGCGGCGCCA GGCCGGCCTC GTCTCCAGCC TCGACTATGA GCAGGCGCGC
CAGCTCCGCG CCCAGACCGC CGCCTCGATC CCGACGATCG AGAACGACTA TGCGACCGCG
GTCAACCGCA TCGCGGTGCT GCTGGGCGAG GCGCCCGGCG CCGTCACCGC GCTGATCGAT
TCGCCCGCCT CGATCCCGCT CGCCCCCGGA GTCGATGCGC CGATCCCCGC GCAGGTGATC
GAGCGCCGCC CCGACGTCGC CAGCGCCGAG CGCTCGCTCG CCGCCGAAAG CGCCCGGATC
GGTGTGCAGA CCGCGCAGCT CTATCCGGCG CTGCGGCTGT CGGGCTCCTT CTCGGGCTCG
TCGACCTCGA TCGGCAACGT GATCAGCGAC GGCATCGGCA ACCTCGTCGC GGGCATCACC
GCGCCGATCT TCCAGGGCGG GCAGATCCGC GCCGCGATCG TCGGCCAGCG CGCCGCCACC
GACGCCGCCT ACGACGCCTA TCGCCAGGCG GTGCTGACCG CGCTCGAAGA GGTCGAGAAC
GCGCTGAAGG GCCGCGAGGT CGCCGAGCGG CGCGAGGCCG ACCTCGCCGT CAGCTACGAG
GCGGCGAACA ACGCCGCGCG CTACGCGCAG CTCCAGTACC GGTCGGGCCT GGTCGACTTC
CAGTCGCTGC TCGACAGCCA GCGCACCCGG CTGAGCAGCC AGGACACCGC CGCCAGCGCG
CGCGCCGCCC GGGCGAGCGC GACCATCCAG CTCTACAAGG CGCTGGGCGG CGGCTGGCAG
ACCGCGCCGA TCCCGGCCCC CGGACCCTAT GAAGGCGGCA AACGGCCCGC CCCTGCCGAG
ACGAGGCCCT GA
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| Protein sequence | MRMDERLANA ARPALGLGLL LLSACNAGPD YRPPSVSDLK IPDQFQASST IAAEQDMVDL
ARWWDSFEDP ILTQLIDRAF AGNLDVDAAA ARLRQARATL RGTQGQALPT AGASGSVTRS
VGADSRTIID PSTGQTIGSG GDTTVYRGGF DVAWEADLFG GIRRSIQAAR ATAEAREADL
RFTQASIASE VGLNYVQARL AQSRLRIARE NLAAQDETFE LVGWRRQAGL VSSLDYEQAR
QLRAQTAASI PTIENDYATA VNRIAVLLGE APGAVTALID SPASIPLAPG VDAPIPAQVI
ERRPDVASAE RSLAAESARI GVQTAQLYPA LRLSGSFSGS STSIGNVISD GIGNLVAGIT
APIFQGGQIR AAIVGQRAAT DAAYDAYRQA VLTALEEVEN ALKGREVAER READLAVSYE
AANNAARYAQ LQYRSGLVDF QSLLDSQRTR LSSQDTAASA RAARASATIQ LYKALGGGWQ
TAPIPAPGPY EGGKRPAPAE TRP
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