| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2139 |
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| Symbol | |
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| ID | 5197139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2398407 |
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| End bp | 2400371 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640581684 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001262636 |
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| Protein GI | 148555054 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.43176 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCGC TGCGCGCGAT CGAGCGGCGC GGCGAGATGC GGGCGCTGCT GGAGCAGGGA
CTGCCGCTGC TCGAACGTTT CCCGCAGGCG GTGCCGCTGC TCCAGATGCT GGGCATCGCC
CATGCCCGGT TGCGCGAACC GGCCGCCGCG GCGGCGCTGT TCGCACGGGT CACCACGGTC
GAGCCCGACA ATGCCGCCGG CCATGTCAAT CTGGGCAACA GCCTGCGCGA CCTCGGCCGG
CGCGACGCCG CGATCCGCAG CTATGAGCGG GCGATCGCGA TCGATTCCGG CCTCGCCCAG
GCGCATTTCA ACCTGGGCAC CGTCCTCTAC GACCTCGGCC GTTCCGCCGA GGCGCTGTCC
CGCTTCGAGG CGGCGATTGC GCTGCGCCCC GATTATGCCG CCGCCCATGC CCAGAGGGGC
GACGCGCTGG TCGCGCTCAG CCGGGCGGAG GAGGCGCTGG GCTGCTATCG CCGCGCGCTC
GACCTCGCCC CCGACATGGC CCGGACGCAC AACAATATGG GCATGGCGCT GCGGCTGCTC
GGCCGCCATC CCGAGGCGAT CGCGGCGTTC GGCGAGGCGC TCGCCCGCCA GCCGGGCCAT
GATGCCGCCC GCATCCGCCG CGCCTATCTG CGCGCGCGCA TCTGCGACTG GGACGCGATG
GCGGAGGATG CCGCGCGGCT GCCGGCGCTC GGCATCGAGG GGCCGCCGGT GCCGCCGTTC
ATGATGCTGG CGCTCGACGA TTCGCCCGCC CGGCACCGGC TGCGCGCCGA CCGCCATGCG
GCGGCGAACT TTCCCCGCGC CGCCGGAGTG GAGACCGTGC CGGCGCGGCC GGTCGCGCCG
GGCGAGCGGC TGCGGATCGG TTATTTCTCG GCCGATTTCC ACGACCATGC GACGATGCAC
CTGATGGCGC GGCTGTTCGA GCTGCACGAC CGCGCCGGCT TCGAGGTCCA CGCCTTCTCC
TACGGGCCGG CGTCCGACGA TCCGATGCGA CGACGGCTGC TCGCCGCGGT CGAGCATTTC
CACGATGTCC GGACGCTCGA CGACCAGGCG ATCGCCGCGC TGGCCCGGCG GGCGGGGATC
GACGTCGCGG TCGACCTCAA GGGCTATACC GCCGACACGC GGTCGGGCCT GTTCGCCGGA
CGCGCCGCGC CGGTGCAGAT CGCCTATCTC GGCTATCCGG GGACGATGGG CGCGCCGTTC
ATCGACTATG TCGTCGCCGA CCGCACCGTC ATCCCGCCCG ACCATCTCGC CCATTACAGC
GAGGCGCCGA TCTGGCTTCC CCACAGCTAC CAGGCGACCG ACGACCGGCG GCCGATCGCC
GACCGGCCGC CGCGCCGGGC CGATGTCGGG TTGCCCGAGC AGGGCTTCGT CTTCGCCAGC
TTCAACGCCA GCTACAAGAT CACGCCCGAT CTGTTCGCGA TCTGGATGCG CCTGCTCGAC
CGGGTCGAGG GCAGCGTGCT GTGGCTGCTC GGCGACGATG CCGACGCAGC CGCGAACCTG
CGCGGCCATG CGCGCCGGCA CGGCATCGAT CCGGCGCGGC TGCTGTTCGC CGCCAAGCTG
CCGGTGGCCG AGCATCTGGC GCGGCAGAAG CTGGCCGACC TGTTCCTCGA CAGCTTCGTC
TGCAACGCGC ACACGACGGC GAGCGACGCG CTGTGGGCGG GCCTGCCGAT CGTGACCCGG
ATCGGCGCGG GCTTCGCCGC GCGGGTCTGC GCGAGCCTGC TGCGCGCGGT CGGCCTGCCC
GAGCTCGTCA CCGACAGCGC CGCCGACTAT GAGCGGCTCG CCTTCGCGCT CGCCACCGAT
CGCGCCGCCC TGGACGCGAT CCGCGCCCGG CTCGCGACGC AGCGGGCGAC CGCGCCGCTG
TTCGACAGCA CCGCCTTCGC CCGGCATATC GAGGCCGGCT ATCGCGCGGC CCATGCCCGG
CGGCTGGCCG GACTGCCGCC GGCGCCGATC GAAATCGAAG CCTGA
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| Protein sequence | MDALRAIERR GEMRALLEQG LPLLERFPQA VPLLQMLGIA HARLREPAAA AALFARVTTV
EPDNAAGHVN LGNSLRDLGR RDAAIRSYER AIAIDSGLAQ AHFNLGTVLY DLGRSAEALS
RFEAAIALRP DYAAAHAQRG DALVALSRAE EALGCYRRAL DLAPDMARTH NNMGMALRLL
GRHPEAIAAF GEALARQPGH DAARIRRAYL RARICDWDAM AEDAARLPAL GIEGPPVPPF
MMLALDDSPA RHRLRADRHA AANFPRAAGV ETVPARPVAP GERLRIGYFS ADFHDHATMH
LMARLFELHD RAGFEVHAFS YGPASDDPMR RRLLAAVEHF HDVRTLDDQA IAALARRAGI
DVAVDLKGYT ADTRSGLFAG RAAPVQIAYL GYPGTMGAPF IDYVVADRTV IPPDHLAHYS
EAPIWLPHSY QATDDRRPIA DRPPRRADVG LPEQGFVFAS FNASYKITPD LFAIWMRLLD
RVEGSVLWLL GDDADAAANL RGHARRHGID PARLLFAAKL PVAEHLARQK LADLFLDSFV
CNAHTTASDA LWAGLPIVTR IGAGFAARVC ASLLRAVGLP ELVTDSAADY ERLAFALATD
RAALDAIRAR LATQRATAPL FDSTAFARHI EAGYRAAHAR RLAGLPPAPI EIEA
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