| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2080 |
|---|
| Symbol | |
|---|
| ID | 5198339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2338351 |
|---|
| End bp | 2339058 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640581625 |
|---|
| Product | carboxymethylenebutenolidase |
|---|
| Protein accession | YP_001262577 |
|---|
| Protein GI | 148554995 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0412] Dienelactone hydrolase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.301648 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCACGGA TAGACAGCTT CGACGGAGAT CGTTTCGACG CCTATGTCGC CGCTCCGGCC
GATGGCGGGG CCGCGCCCGG AATCGTCGTC ATCCAGGAGA TACGGGGCGT CAACGAGGAT
ATCCGGGGCA TCTGCGACCG GCTGGCGCGG CAGGGCCATC TGGCGATCGC GCCCGACATG
CTGTGGCGGC AGGAGCGCAA CGCGGTGTTC GACCCCGACA CGCCCGCCGG CTGGGACAAG
GCGATGGCGC TGCACGAGGG CTTCGACGAG GACAAGGCGG TGCGCGACAT CGCCTCGGCG
GTCGACTGGC TGCGCGCGCA GCCCGGCTGC TCGGGCAAGG TCGGGGTGAT CGGCTATTGC
CTGGGCGGCA AGCTTGCCTT CCTGTCCGCC GCGCGGGCCG GGGCCGACGC GGCGGTCGCC
TATTACGGGA TCGGCATCGA GCATGTGCTC GACGCGATCG ACGACGGGTT CGCGCCGACC
CTGCTGCACG TCGCCGCGCT CGACCGCTTC GTGCCGGCCG AGGCGCAGGC GGCGCTGGCC
GAACAGGCGC GCCGGACGCC GGCTCTGACC ACCCACATCT ATCCCGGCGC GCACCACGCC
TTCGCGCGAT CGGAAGGCGT GCATTTCCAT GCCGACGCCA GCGCCACGGC GCAGCGGCGC
ACCGAGCAAT TCCTGCAAAC GCACCTGCGT GACGGGGGCC GTCCCTGA
|
|---|
| Protein sequence | MARIDSFDGD RFDAYVAAPA DGGAAPGIVV IQEIRGVNED IRGICDRLAR QGHLAIAPDM
LWRQERNAVF DPDTPAGWDK AMALHEGFDE DKAVRDIASA VDWLRAQPGC SGKVGVIGYC
LGGKLAFLSA ARAGADAAVA YYGIGIEHVL DAIDDGFAPT LLHVAALDRF VPAEAQAALA
EQARRTPALT THIYPGAHHA FARSEGVHFH ADASATAQRR TEQFLQTHLR DGGRP
|
|---|
| |