Gene Swit_2017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_2017 
Symbol 
ID5199433 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2258114 
End bp2258956 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content70% 
IMG OID640581561 
Productprotein tyrosine/serine phosphatase 
Protein accessionYP_001262514 
Protein GI148554932 
COG category[T] Signal transduction mechanisms 
COG ID[COG2365] Protein tyrosine/serine phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.166797 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGCCC GATCACCCGA CGCCGCCCCC GCGCGGCAAC GCCATGTCGT CTTGCCGGGC 
ACGTCGAACC TGCGCGATCT CGGCGGCTAT GCGGGTGCCG GCGGCCGCAA GGTCCGCTGG
GGGCGGCTCT ATCGCTCGGG CGCGATGCCG AAGCTGGGGG CGGCGGACTG GGTGTGGATG
CGGGCGCAGC GCATCGCGCT GGTCTGCGAC CTCCGCTCCG CGGCCGAGCG CGAGCTGGCG
CCGACGCGCT GGCAGGGGCC GGAGCATAGC CGCCACATCT TGGCCGACTA TGATCCCGCC
CTGATCTACG GAAGGCCCTT CGTCCCGGCT CGCCCCGGCG CGGCGGTCAA CGACCTGCAC
CAGGGGCTCT ACGGCCTGTT CGTCGAGATC CTCGCCCCGA CCTTCGCGGA GCTGTTCGCG
GCGCTGCTCG ACGGGGAGGC GCCGGTCATC TTCCATTGCT CGGCCGGCCA GGACCGGACC
GGCCTGGCGG CGGGATTGCT GCTCGACCTG CTCGGGGTCG ATCGCGACAC CATCTATGCT
GATTATCTGC TGTCCACCGA ATGCCGCCGC TTCGACAATG AGCTGGACCG GCTCGGCGTC
GCGGCCTTCG CGGACACCAA CCTCGTTGCC CGCTTCTATA CCGACGCGAT CCGCCGCAAC
GGCATGGATG CGATCAAGCC GCCGAAGCTG GTCGATGCGG AAGGGACGGC CCTGCTGAAG
CACGGTTTCG ACGCGATCGA GGCGCAATTC GGCAGCGTCG AGCGCTATGC GGAGCAGCGG
CTGAAGATGG ACGCCGGGGC GATCGGGCGG CTGCGCGCGC TGTATCTGGA ACCGGACGCC
TGA
 
Protein sequence
MPARSPDAAP ARQRHVVLPG TSNLRDLGGY AGAGGRKVRW GRLYRSGAMP KLGAADWVWM 
RAQRIALVCD LRSAAERELA PTRWQGPEHS RHILADYDPA LIYGRPFVPA RPGAAVNDLH
QGLYGLFVEI LAPTFAELFA ALLDGEAPVI FHCSAGQDRT GLAAGLLLDL LGVDRDTIYA
DYLLSTECRR FDNELDRLGV AAFADTNLVA RFYTDAIRRN GMDAIKPPKL VDAEGTALLK
HGFDAIEAQF GSVERYAEQR LKMDAGAIGR LRALYLEPDA