| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2001 |
|---|
| Symbol | |
|---|
| ID | 5198749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2241687 |
|---|
| End bp | 2242451 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640581546 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001262499 |
|---|
| Protein GI | 148554917 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.402677 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCG AAGGACAGGT CGCGGTCGTC ACCGGCGGAG CATCGGGCCT CGGGCGCGCC
TGCGCCGAAC GGCTGGCGGA GGGCGGAGCC ACGATATTCA TCACCGACCT GCCGACGTCG
GCCGGAGAGG ACGCCGCGGC CGCCATCGGC CGGGGCTGCC GCTTCGTGCC CGGCAACGTC
CGGTCGGAAG AGGACATGCG CGCGGTGTTC GAACAGGCCC GGCAGGCCGG TCCGGTCCGG
GCCACGGTCC ACTGCGCGGG GCGCGGCGGC CCGGTGCGCG TGCTGGACAA GGAAGGCAGG
CCCGGCTCGC TCGCGACCTA TGAGGAGATC GTGCAGACCA ACCTTATCGG CAGCTTCAAC
GTCCTGCGCC TCGCCGCCGA GGCGATCGCC CGGACCGAAC CGGCGGACGG CGAGCGCGGC
GTCATCGTGC TCACCGCCTC GGTCGCCGCG TTCGAGGGAC AGATCGGGCA GATCCCCTAT
GCGTCGTCCA AGGCCGGCGT CGTCGGCATG ACGCTGGTCG CCGCGCGCGA TCTCGCCTCC
CGGCTGATCC GGGTCTGCAC GGTCGCGCCG GGCACCTTCG ACACGCCCTT GCTGGCGCGC
GTGCCGGACG CCGTGCGGGC CGAGCTCGGC CGTTCGGTGC CGCATCCGGC GCGGCTCGGC
GCGCCGTCCG AGTTCGCGGC GCTGGTCGAG CATGTCATCG CCAATCCCAT GCTGAATGGA
GAAACGATTC GCCTCGACGG GGCGATACGC ATGCCGCCCC GCTGA
|
|---|
| Protein sequence | MKIEGQVAVV TGGASGLGRA CAERLAEGGA TIFITDLPTS AGEDAAAAIG RGCRFVPGNV
RSEEDMRAVF EQARQAGPVR ATVHCAGRGG PVRVLDKEGR PGSLATYEEI VQTNLIGSFN
VLRLAAEAIA RTEPADGERG VIVLTASVAA FEGQIGQIPY ASSKAGVVGM TLVAARDLAS
RLIRVCTVAP GTFDTPLLAR VPDAVRAELG RSVPHPARLG APSEFAALVE HVIANPMLNG
ETIRLDGAIR MPPR
|
|---|
| |