Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1985 |
Symbol | |
ID | 5197196 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2224120 |
End bp | 2226384 |
Gene Length | 2265 bp |
Protein Length | 754 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640581530 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_001262483 |
Protein GI | 148554901 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCGAA ATCGCACTTC TATCCTGCTG GCTCTGCTCG GGACCTCGGT CCTCGCGGCG CCTGCTCTCG CCCAGGGCGC CGCCGCGCCG GCCGCCGATG CCGCCGAGGA GGCTCAGGGC CTTTCCGATA TCGTCGTGAC CGCCCGTCGC CGCACCGAGC CGCTGCAGGC GACCCCGCTC GCCGTGTCGG CGCTCGACAG CCGGCGGCTG GAGGAGGCGC GCGTCTCCAA CATCACCGAT CTGACCAACC TCACGCCGTC GATCACGCTG GCGCGCAACA CGACCAATCC GACCTCGCTG TTCCCGTGGA TTCGCGGTTT CGGCACCAAG TCGACCGATC CGGCCGCGGA GCCGCCGATC GCGATCACGA TCGACGGCAT CTATCAGGCA CAGCTGGTCG GCGCCTTCGT CAACCTGTTC GACGTGGAGG CGATCGAAGT GCTGCGCGGT CCGCAGGGCA CGCTGCTCGG CAAGAACGCC CCCGCCGGCG GCCTTTCGAT CCGTACCCGC CGGCCCGGCG AGGAGTTCGC GGCCAAGGGC CAGATCGAAT ATGGCAGCTT CAAGAACCTG CACGCCAGCG GCTGGGTCGA CGTGCCGCTG GTTCCGGGCG CGCTGTTCGG CACCGTCTCG GCGAACTACC AGCATTCGAA CGGCTATCAG AAGAACATCG TGACCGGCCA GACGCTGGGC GGGATCAACA CCTCCTCGTT CCGCGCCGGC CTGCTCGCCA AGCTGGGCGA CAGCACGACC TGGTACGTCA CCGCCCAATA TGACCAGGAC AAGGGCGAGG ATGCCGGTGA TCGCAACATC AGCACCACCG ACCCGCTGGT CGTGCCCGGC CTGACCTATG TCGTGCCGCC GTCCGCTTCG CTGACCTGCA CCAATGCCTA TAGCCGCGCG CTGTGCGCCA ACGGCACCTT GCCGAACAAC CGTCGCTACA CCACCCAGGC GCTGCCCGGG CCGGATCGCG ACAGCCATAA TTTCAGCGTG GCATCGAACC TCGACGTCGA TACCGGCCCG GTCGCCCTGG CCCTCGTCAC CGGCTATCGC CAGTTCCGCG AGCTGGCTTT CTCGGACATC GATGGCACCC AGCTCGGGAT CATCGACTCC CGCTACGACG GCAACTACCG CGCCTTCTCC CAGGAGTTCC GCGTCGCGTC GAGCGACGGC GGCGGCCTCG ACATGGGCGG CCGGCTCCGC TGGCTCGTCG GTTCCTATTA CTTCAACTAC GACTATGACC GCTTCAACCG GTCGACCACG CTCGGCGCGC CGTCGACGAC CTATCAGGAG GGCGAGACCA AGAGCTACGC GCTGTTCGCC CATGCCGAGT TCGACATCCT GTCGAACCTC AACCTGTCGG GCGGCATCCG CCAGACCTGG GATCGCAAGA CCCACCTGTC GCGCGCCCAG CGCTTCTTCT CGGGGATCGA TCCCGAATTC TCCCAGCGTC ATGCCTGGGA CAACATCTCC TACGACGTGA CGCTGAACTA CAACATCACG CCCAACAACA TGATCTATGT GCGCCGCGCC ACCGGCTATC GCGGCGGCGG CTTCACCGGC GTTCCCGCCA CCGCTCTGGC GGTGTCGACG GCCGATCCGG AGACGGTGGG CGCCTGGGAG TTCGGTTCGA AGAACGACTT CTTCAACCAT CGCCTGCGCA TCAACCTGTC GGTGTTCCGC AACAAGTTCC AGGACCTGCA GCGCGTCATC ACCGTCCCGG TCGACGTCGC CCCCTTCTTC GTGCAGCGCC TGCTCAACGT TGCGAGCGGC ATAACCCAGG GTGCGGAGGT CGAGCTGCAG GCCCGTCCGG TGAGCGGGCT GACCCTGCGC GCCAACCTCG GCTATCTCGA CGCGAAATAC ACGCAGTTCA ACGCGAACGT CACCGGCAAC CTCGCCAACG GCAATGCCGA TCTCACCTTC CTGCGCTTCC CCTATACGTC CAAGTGGACG GCGCAGTTCG GCGCGACCTA CGAGGCCGAT CTCGGTTCGA GCGGCAAGCT GGTCTTCTCG GCCGACTACA ACTACCGCTC GCGCTACAAC GTGACCGACC TGAACTATGC CTTCGGCGAG CAGAAGGGCT TCGGCCTGCT GTCGGGCACG ATCACCTGGC GCGATGCCGA CGACCGCTAT TCGGTCTCGG TGTTCGGCCG GAACCTGACC GACAAATTCT ACATCGACGG CGGCGACGCG GTCGGCGGCC TGACCACCTA TGTCTCGGAC GGCCCGCCGC GCGAATGGGG CGTCTCGGTC GGCTTCAACT TCTGA
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Protein sequence | MMRNRTSILL ALLGTSVLAA PALAQGAAAP AADAAEEAQG LSDIVVTARR RTEPLQATPL AVSALDSRRL EEARVSNITD LTNLTPSITL ARNTTNPTSL FPWIRGFGTK STDPAAEPPI AITIDGIYQA QLVGAFVNLF DVEAIEVLRG PQGTLLGKNA PAGGLSIRTR RPGEEFAAKG QIEYGSFKNL HASGWVDVPL VPGALFGTVS ANYQHSNGYQ KNIVTGQTLG GINTSSFRAG LLAKLGDSTT WYVTAQYDQD KGEDAGDRNI STTDPLVVPG LTYVVPPSAS LTCTNAYSRA LCANGTLPNN RRYTTQALPG PDRDSHNFSV ASNLDVDTGP VALALVTGYR QFRELAFSDI DGTQLGIIDS RYDGNYRAFS QEFRVASSDG GGLDMGGRLR WLVGSYYFNY DYDRFNRSTT LGAPSTTYQE GETKSYALFA HAEFDILSNL NLSGGIRQTW DRKTHLSRAQ RFFSGIDPEF SQRHAWDNIS YDVTLNYNIT PNNMIYVRRA TGYRGGGFTG VPATALAVST ADPETVGAWE FGSKNDFFNH RLRINLSVFR NKFQDLQRVI TVPVDVAPFF VQRLLNVASG ITQGAEVELQ ARPVSGLTLR ANLGYLDAKY TQFNANVTGN LANGNADLTF LRFPYTSKWT AQFGATYEAD LGSSGKLVFS ADYNYRSRYN VTDLNYAFGE QKGFGLLSGT ITWRDADDRY SVSVFGRNLT DKFYIDGGDA VGGLTTYVSD GPPREWGVSV GFNF
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