| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1961 |
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| Symbol | |
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| ID | 5199954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 2196782 |
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| End bp | 2199133 |
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| Gene Length | 2352 bp |
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| Protein Length | 783 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640581506 |
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| Product | Pyrrolo-quinoline quinone |
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| Protein accession | YP_001262459 |
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| Protein GI | 148554877 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.567557 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGAACG ACGAGAAGAG CGGGATCGGG GCCAGGCGCA TGCTGGAACG CGCGTTCGCG
GGGATATCGT TGCTGGCGGG CATGGGGATG GCGCTGCCCG GCGCCTATCT GCTGACGCTG
GGCGGGTCGA CCTATTATCT GGTGGCGGGC GTGCTGCTGG TCGCCGCCGC CGTCGATCTG
TGGCGGGGCC GGGCGCGCGG CGCTTGGCTG TTCCTGCTCG TCTGGCTCGG AACCCTCGGC
TGGGCGCTGT GGGAGGCGGG CCTCGACGGC TGGGCGCTGC TGCCCCGGCT CGGCCTGCTG
ACCGGCATGG GCATCGTCCT CGCGCTGATC CGCTGGCGGC CCGGAGCCCG CACCGCCCGG
ATCGCGGCGA CGGCGACGGC CGCCGCGGCC CTGCTCGCAA GCATCAGCCT GGTCCTGACG
GGATCGCACG GCAACGCTTC CCTGCCGCTG GCCGCTTCGA CGGCCGCCGG TGTCGCCGAC
GGCGAATGGC ACCATATCGG CCGCACGGTG GGCGCCGATC GCTTCTCCCC GCTCGACCAG
ATCACCCCGG CCAATATCGG CAAGCTCCAG GTCGCCTGGA CCGCCCATCT CGGCATGCCG
CCCAAGGGCC TCGCCGGCAC CATCGAGGCG ACCCCGCTGA TGGTCGGTGA CACCCTCTAC
ACCTGCAACA TGGACAATGC CGTCATCGCC ATCGACCCCG ATAGCGGAAA GACCAGATGG
GCCTTCGATC CGAAGCTGAA CGTCGACGGC CTCAAGATGA CCCAATGCCG GGGCGTGACC
TATCATCGCC AGCCCGGCAT CAGCGGCCCG TGCGCCGAGC GGATCATCCT CACCACCTAT
GACAACCGCC TGTTCGCGCT CGACGCGCAT GGCGGCCAAC GCTGCCGGGA CTTCGGGAAC
AATGGCGAGG TGAGCCTGCT CGACGGCATG GGCGGCGTCC CCAAGGGCTA TTATTACCAG
ACCTCGCCCG CCGCGCTGGT GCGCGACAAG CTGATCGTCG GCGGCTGCGT GCTCGACGGC
CAGGCGGTCA ACGAGCCGTC GGGGGTGATC CGGGCGTTCG ACGCGGTGAC CGGCAGGCTC
GCCTGGGCCT GGGACATGGG CCGTCCCGAC CGGCAGGGGC TTCCCCCGGC GGGCGAGACC
TATACCCGCG GCACCCCCAA TGCCTGGCCG CCCATCTCGG GCGACGACAG GCTCGGCCTC
GCCTTCGTCC CGCTCGGCAA CCCGACGCCC GACTATGTCA TGTCGCACCG CACGCCCGAG
ATGCGCCGCT ACGGCAGCTC GGTCGTCGCC CTCGACGTCG AGACCGGCAA GGAGCGCTGG
CACTACCAGA CCACCCATCT CGACGTCTGG GACTATGACC TGCCTGCCCC CGCCAGCCTG
GTCGACTTCC CCACCGCCCG GGGCCTGCGC CCCGCGCTGA TCCAGCCGAC CAAGCGCGGC
CAGTTCTTCG TGCTCGACCG CGAGACCGGC AAGCCGCTGG TCGAGACGGT CGAGCGCGCC
GTGCCGCAGG GCGCCGCGCC GGGCGAGAGC CTGTCGCCGA CCCAGCCCTA TCCGGTCGGC
ATGCCCTCGC TCGCCGGGCC CAGGCTCAGC GAGGCCCGCA TGTGGGGCAT CACCCCGTTC
GACCAGATCT GGTGCCGCAT CCGCTTCAGG CAGGCCCGCT ACGACGGCGA CTTCACCCCG
GTCGGGACGG ACAAGCCCAG CATCATCTTC CCGGGCATGT GGGGAGGGTC GACCTGGTCG
GGCATATCGA TCGATCCCGA GCGCCGGATC ATGGTCGCCA ACGTCAACCA TTTCCCGATG
TACAACCGGC TCGTCCGCCG CGCCGATGCC GATCCGAAGG AATATCAGCA ATTCGTCGCC
GGCCGCGTCG CGATCAACAG TTCGCGCTGG TCGCAGACCG GCACGCCCTA TGCGGCCAAG
GTCGAGCCGT TCATGTCCCC GCTCAAGATC CCGTGCAGCC AGCCGCCCTA TTCGGAGATC
GCGGCGATCG ACCTCGGCAA GCGCGCCATG ATGTGGCGAC ACCCGGTGGG ACGCGCGCGC
AACACCGGCC CGTTCAACAT CGCGACGGGC GTGCCCTTCG TGGTAGGCAC GCCGACGCTG
GGCGGCTCGA TGGTCACCCG CTCCGGCCTC GTCTTCATCG CGGCGACGCA GGAGCCGGCC
TTCCGTGCCT ATGATCTCCG GACGGGCAAG CTGGTGTGGG AAACCCGCCT GCCGACCACC
GGCCATGGCA ACCCGATGAC CTATCGGTCG CCGCGCAGCG GCCGGCAGTT CGTGCTCATC
CCCGCGAGCG GACACCCCCG CTTCCTCAAC ACGGCATCCG ATCAGCTCAT CGCCTACGCC
CTGCCCGAAT AG
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| Protein sequence | MVNDEKSGIG ARRMLERAFA GISLLAGMGM ALPGAYLLTL GGSTYYLVAG VLLVAAAVDL
WRGRARGAWL FLLVWLGTLG WALWEAGLDG WALLPRLGLL TGMGIVLALI RWRPGARTAR
IAATATAAAA LLASISLVLT GSHGNASLPL AASTAAGVAD GEWHHIGRTV GADRFSPLDQ
ITPANIGKLQ VAWTAHLGMP PKGLAGTIEA TPLMVGDTLY TCNMDNAVIA IDPDSGKTRW
AFDPKLNVDG LKMTQCRGVT YHRQPGISGP CAERIILTTY DNRLFALDAH GGQRCRDFGN
NGEVSLLDGM GGVPKGYYYQ TSPAALVRDK LIVGGCVLDG QAVNEPSGVI RAFDAVTGRL
AWAWDMGRPD RQGLPPAGET YTRGTPNAWP PISGDDRLGL AFVPLGNPTP DYVMSHRTPE
MRRYGSSVVA LDVETGKERW HYQTTHLDVW DYDLPAPASL VDFPTARGLR PALIQPTKRG
QFFVLDRETG KPLVETVERA VPQGAAPGES LSPTQPYPVG MPSLAGPRLS EARMWGITPF
DQIWCRIRFR QARYDGDFTP VGTDKPSIIF PGMWGGSTWS GISIDPERRI MVANVNHFPM
YNRLVRRADA DPKEYQQFVA GRVAINSSRW SQTGTPYAAK VEPFMSPLKI PCSQPPYSEI
AAIDLGKRAM MWRHPVGRAR NTGPFNIATG VPFVVGTPTL GGSMVTRSGL VFIAATQEPA
FRAYDLRTGK LVWETRLPTT GHGNPMTYRS PRSGRQFVLI PASGHPRFLN TASDQLIAYA
LPE
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