Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1951 |
Symbol | |
ID | 5197182 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2184651 |
End bp | 2186093 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640581496 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001262449 |
Protein GI | 148554867 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCAGGA TCGCCATGCT GGCGCTGCTG ATGACCAGCG CCTGTTCGAT GAACCCGCGG CTCGATATCC CGAAGCCGCC GGTCGCGACC CACTATCCCG ACGCGACGGC GGCGGAGCCG GCGAGCGCCG CCGCGATCGA CTGGCGGACG ATGTTCGGCG ACCCGCGCCT CCAGGCGCTC GTCGACCTGG CGCTGGCCAA CAATCGCGAC CTGCGTGTCT CGACGCTCAA CGTCGAGGCG GCGCGCGCCC AGTTCCGGGT GGCGCGCGGG GCGATGCTGC CGCAGGTCGA CGCCAACGGC TCCTATACCC GCCAGCGCAT CCCGACGAGC ACGGCGTCGG CGGGGATCGG CGGGGCGACC GGCGGCGGCA CCGGCGCGGG CGCGCCGAGC GGGTTCGAGT TCGGCCAATA TTCGGCCAAT GCCGCGCTCA CCAGCTTCGA GATCGACCTG TTCGGCCGGC TCCGCTCGCA GAGCCAGGCG GCGTTCGAGC GCTATCTGGC GAGCGACGAG GGCCGCCGTT CGGCGCGGAT CGCGCTGATC GGGTCGGTGG TCGACGCCTA TCTGGCCGAA CGGCTCGCCG CCGAGCAGCT CGCGCTGACC GAGCGGACGA TGGCCGACTG GAACAGCTCG CTCGACATCA CCCGCCGCCA GCACGAGGCG AAGCAGGTCA GCGGGCTCGA ACTGGCGCAG GCCGAGGGGC AGGTCCAGCA GGCGGCGGCC GACCTCGCCG CCGGCCAGCG GGCGCTGGCG CAGGCGGGCA ACGCTCTGCA ACTGCTGGTC GGCGCGCCGA TCCCGGCGGA CCTGCCGGCG CCGATCCCGC TCGCCGACCA GCCGATCATG ACCCAGCTTC CGGCCGGGCT GCCGTCCGAC CTGATCGCCA ACCGGCCCGA CATCCGTCAG GCCGAGCGCG AGCTGGTCGC CGCCAATGCC GATGTCGGTG CGGCGCGCGC GGCCTTCTTC CCGCGCCTGT CGCTGACCGG GCTGTTCGGC TTCACCAGCC TGGCGTTCGA CGACCTGTTC AAGGGCGACA ATCGCAGCTG GTCCTTCACC CCGCAGATCA GCCAGCCGAT CTTCCGGGGC GGCAGCCTGC GCGGCGAGCT GCGGCTCGCC AAGGTGCAGA AGTCGATCGC GATCGCCAAT TACGAGAAGG CGATCCAGAC CGGCTTCCGC GAGGTCGCCG ACGGTCTGGC CGGCCGCGCC ACTTTTGCGC GCCAGCTCGA TGCCCAGCGC AAGGCGGTCG ATGCCGCCGA GCGGCGCGCG CGGCTGTCCG ACATGCGCTA CCGCGTCGGC TTCGACAGCC GGCTCGAGCT GCTCGACGCG CAGCGCAGCG AATATGCGGC GCAGCAGGCG ATGCTGGAAC TGCGGCGGCA GGAGCTGTCC AGCGCGACCG GGCTCTACCG GGCGCTGGGC GGCGGGGACG AGGACCGGAC GCCGCGCAAA TAG
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Protein sequence | MRRIAMLALL MTSACSMNPR LDIPKPPVAT HYPDATAAEP ASAAAIDWRT MFGDPRLQAL VDLALANNRD LRVSTLNVEA ARAQFRVARG AMLPQVDANG SYTRQRIPTS TASAGIGGAT GGGTGAGAPS GFEFGQYSAN AALTSFEIDL FGRLRSQSQA AFERYLASDE GRRSARIALI GSVVDAYLAE RLAAEQLALT ERTMADWNSS LDITRRQHEA KQVSGLELAQ AEGQVQQAAA DLAAGQRALA QAGNALQLLV GAPIPADLPA PIPLADQPIM TQLPAGLPSD LIANRPDIRQ AERELVAANA DVGAARAAFF PRLSLTGLFG FTSLAFDDLF KGDNRSWSFT PQISQPIFRG GSLRGELRLA KVQKSIAIAN YEKAIQTGFR EVADGLAGRA TFARQLDAQR KAVDAAERRA RLSDMRYRVG FDSRLELLDA QRSEYAAQQA MLELRRQELS SATGLYRALG GGDEDRTPRK
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