Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1936 |
Symbol | hemC |
ID | 5196364 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 2169683 |
End bp | 2170609 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 640581481 |
Product | porphobilinogen deaminase |
Protein accession | YP_001262434 |
Protein GI | 148554852 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.0833928 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGCTT CGCTCTCCCG TCCCCTCCGT CTCGGCACCC GCGGATCGCC GCTCGCGCTG ACCCAGGCCC GCATGGTGAT CGCCGCGCTG CGGGCCGCCC ATGGATGGGA CGAAACCGCG GTCGAGATCG TCGCGATCAA GACCAGCGGC GACCGCATCC AGGATCGCGC GCTGGCCGAG GTCGGCGGCA AGGCGCTGTG GACCAAGGAG CTCGACATCG CCCTGGCGGA CGGCACGATC GACTTCGCGG TCCATTCGAT GAAGGACGTC GAGACGATCC GCCCGGCCGC GATCGTCATC GCCGCGATGC TGCCCCGCGC CGACGTGCGC GACCGGCTGA TCGGCGCCGC CTCGCTGGCC GCGCTGCCGC AGGGCGCCCG GGTCGGCACC TCCTCGCCGC GCCGGTCGGC GCAGGTCCGG CGCGCGCGGC CCGATGTCGG GATCGTGCTG TTCCGCGGCA ATGTCGACAC CCGCCTCGGC AAGCTGGCGG CGGGCGAGGC GGAGGCGACG CTGCTCGCCG GCGCCGGCCT GATCCGGCTC GGCCGCGACG AGATCGGCCA TCCGATCCCG ATCGAGGAGA TGCTGCCCGC CCCGGCGCAG GCCGCGGTCG GCATCGAGAC GCTGGCCGAG CGAACGGACG TGCGCGCGCT GCTCGGCGCG ATCGACGACG CGCCGACCAA CGCCTCCGTT TCGGCCGAAC GCGCGCTGCT CGCCGCGCTC GGCGCCGATT GCCGCTCGCC GGTGGCCGCG CTCGCCGTCC GGTCGGGCGC CGGGCTGCTG CTGCGCGCCG AGATCATGAC CGAGGACGGC AGCGAGCATC GCTCGGGCGA GGCGATGCTG TTCGAGACCG GCGACGCCGC CGCGCTCGCC CACCGGCTGC TCGACGGCGC CTCGCCCCGC CTCCGCGCGC TGTTCACCGG CGCATGA
|
Protein sequence | MTASLSRPLR LGTRGSPLAL TQARMVIAAL RAAHGWDETA VEIVAIKTSG DRIQDRALAE VGGKALWTKE LDIALADGTI DFAVHSMKDV ETIRPAAIVI AAMLPRADVR DRLIGAASLA ALPQGARVGT SSPRRSAQVR RARPDVGIVL FRGNVDTRLG KLAAGEAEAT LLAGAGLIRL GRDEIGHPIP IEEMLPAPAQ AAVGIETLAE RTDVRALLGA IDDAPTNASV SAERALLAAL GADCRSPVAA LAVRSGAGLL LRAEIMTEDG SEHRSGEAML FETGDAAALA HRLLDGASPR LRALFTGA
|
| |