| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1868 |
|---|
| Symbol | |
|---|
| ID | 5199274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2092024 |
|---|
| End bp | 2094831 |
|---|
| Gene Length | 2808 bp |
|---|
| Protein Length | 935 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640581413 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001262366 |
|---|
| Protein GI | 148554784 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.31102 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.519882 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGATTG CGCGAACGGC CGATCAACGG CGCGGATGGA CGATATTGCT CGGTGCGGCC
AGCATCATGG CGCTGGCGAC GCCGGCCGCC GCGCAGGAGG AGGCACCGGC TCCGGCCGCC
ACGGCGGCGT CCGACATCGT GGTGACGGGC ACCCGCGTTC GCGACCCGAA CCTCAAATCG
TCGAGCCCGG TCACGGCGGT GACCAACCAG GCGCTGCTGC TGTCGGGCAG CCCGACCGTC
GATCGCCTGC TCAACAACCT GCCGCAGATC GCCCCGTCGC AGAATGCGAC GAGCAACCGT
GGCGACGGCA TCGTCAGCGT CGACCTCCGC AAGCTCGGGC CGAGCCGTAC GCTGGTGCTG
GTCAACGGCC GCCGGATGGT GCCCTCCTCG GGGCTCGGCA TCGTCGATCT CAACAGCATC
CCTTCGGCCC TGCTCGAACG GGTCGAGGTC GTCACCGGCG GCGCGTCGGC GGTCTACGGG
TCGGACGCGC TGGCCGGCGT CGTCAACTTC ATCCTCGACA AGAAATATGA AGGGCTGGGC
CTGCGCGCCG AGACCGGCGT CTCCGATCGC GGCGACGGCA CCAACCGGCT GATAGAGGGA
ACGCTGGGCG CGAGCTTCGA CGACGGGCGC GGCAACGTCG TGCTGTCGGC GGGCTTCAGC
CGGCGCGGCG AGGTCCGCGC GGCCGACCGC AAGGGCTTCG GGGTCAGCAT CAACGGCGGC
TCGGCGACCG CGCCCGCCGG CCGGATCGAC AATATCGGGC TCAACCCCAA CCTGACCGCC
GGAAGTTTCC TCGGTACCGG CGGAACGGCG CGCGACTATG CGTTCACGCC CGACGGCAAC
GGCATTCGCG GCTTCATCAA CAGCCTGCCG ACCGCGACGA CGCCGGGCGA CCGCTATAAT
TTCTCCAACA AGGAATTCCT GCAGATCCCG CTCGAACGGC TGTCGATGGC GGCGCTGGGC
AGCTATGAGC TCGCCCCGTC GATCGAGGCC TTCGTCGAGA CCTATTTCAC CCATAACAAG
GTGAACATGC GTCAGGGCGA GAGTCCGCTG ACCAATGGCA CGCTGTCGCC GACCAACCCG
TTGCTGCCGC AGGTCGCGCG CGACATGCTC GCCGCGCGGC CGAACCCGAC CGCCAATGCC
AGCTTCCAGC GCCGGTTGAC CGAGCTGGGG CCGCGCCTGC AGACCGTCAC CACCGACGCG
CTCCAGATCA ACGCCGGTTT GCGTGGACAA TTGTGGGAGA ACTGGGACTG GGAAGCCTAT
TATGGTTATG GTCGGTCTGA TCAGACGCGG ACGATCCGGG GCGGTGCCTC ACAATCACGG
ATCAACGCCT CGCTGCTCGG CTGTCCGGCC GGAACGGTTC AGGTTCTCGG CTGCCGGCTG
ATCGACTTCT TCGGGCCGAA CTCGCTGACG GCGGCCGATC TCGCCTATAT CGGCGTCGAC
AATGCCAAGG ATAAGACGCT CTTCACCCGC AATGCGGCGA GTGCCTCGAT CACGGGTCCG
ATCTTCACGC TGCCCGCAGG CGCGGTGAAC GTCGCCTTGG GCGCCGAATA TCGTAAGGAC
TCCTTCCAAT ACCAGCCCGA CGACATCCGG CGGCGCGGAG ATCTCGCCGG CTTCGATCCG
TCGCGGCCCA CGGCCGGCAG CTATGACGTG AAGGAGGTGT TCGGCGAACT GGTCGCGCCC
TTGCTTGCCG ACATTCCCGG CATTCATCGG CTGACACTGG AGGTTGGAGC GCGTTACGCC
GACTATTCGA GCGTCGGCAC GGTATTCACG TTCAAGGCGG GCGGTAGTTG GGAGCCCTTT
GCCGATCTGC GGCTGCGCAG TCTCTATCAG CGTGCGACCC GCGCCCCGAG CGTGTTCGAA
CTGTTCCAGG GCGGGGACAC ATCGGCGCAG ACCTTCACCG ATCCCTGTGC GACGATCGCA
CCGACAGGCA GCGTGCTGCC CGCGCCGAGC GCGGCGGTGG CGACGATCTG CCAGCTTCAG
GGGCTCGCCG ACCCGCGGAC CAACGGCTTC ACCCAGGTCA GTCGGACGCT GGACGTCAAT
AGCGTCGGTA ATGCGAATCT GCGCGAGGAG ACGTCGCGAA CGATTACTGC GGGTGCCGTG
TTCACGCCGC ATTGGCTGCC GGGGCTAACC CTCTCGGTGG ATTATTATCG GATCAAGGTT
TCTGACTATA TCAATCGGGC CTTCAGCGGC GTGAACGGTG TGATCGCCAA TTGCTTTGCG
AGCGGGGTGA CGACCGCGAC CGCTCTGGCC GCACAGCCTG CCTGCCAATT GCTGGCGAGA
CGCGCCTCGG GTGAACTCAC GGCGACGCTG CCGCTGGCCA ACGTCCAGAC GCTGAAGACC
TCGGGCCTCG ACATCCAGGC CAATTACGCG CTGCCGCTCG ACCGGATCGG CCTCGGCGAC
GTGGGCACGA TCGACCTCGC GGGCACGGCG ACCTATCTCC GCGACTACAA GACGGTCGGG
CAGGACTATG TCGGGCGGAT CAGCCAGAAT TTCGGCGGCA TCCCCAAATG GCGCACCTCG
GTCGACCTCG GCTGGCGCAA CGACGATGCC GGCGTCCGCC TGCAATGGCG CCGGATCGGC
GGCATGGTCG AGGACATCAG CCAGCGGCAT ATTCCGGCGG TGAACTATTT CGACCTCAAC
GGCCGGCTGG AGGTCGGCGA GCGGATCGAG TTCTATGGCG GCATCAACAA TCTGTTCGAC
CGCAAGGCGC CGCTCGTCCC CAACCAGATC TTCAACAGCG ACACCCAGAA TTATGACATT
GTCGGCCGCT ACCTCTTCAT CGGCGCCAAG CTGCGCTTCC GGCCCTGA
|
|---|
| Protein sequence | MMIARTADQR RGWTILLGAA SIMALATPAA AQEEAPAPAA TAASDIVVTG TRVRDPNLKS
SSPVTAVTNQ ALLLSGSPTV DRLLNNLPQI APSQNATSNR GDGIVSVDLR KLGPSRTLVL
VNGRRMVPSS GLGIVDLNSI PSALLERVEV VTGGASAVYG SDALAGVVNF ILDKKYEGLG
LRAETGVSDR GDGTNRLIEG TLGASFDDGR GNVVLSAGFS RRGEVRAADR KGFGVSINGG
SATAPAGRID NIGLNPNLTA GSFLGTGGTA RDYAFTPDGN GIRGFINSLP TATTPGDRYN
FSNKEFLQIP LERLSMAALG SYELAPSIEA FVETYFTHNK VNMRQGESPL TNGTLSPTNP
LLPQVARDML AARPNPTANA SFQRRLTELG PRLQTVTTDA LQINAGLRGQ LWENWDWEAY
YGYGRSDQTR TIRGGASQSR INASLLGCPA GTVQVLGCRL IDFFGPNSLT AADLAYIGVD
NAKDKTLFTR NAASASITGP IFTLPAGAVN VALGAEYRKD SFQYQPDDIR RRGDLAGFDP
SRPTAGSYDV KEVFGELVAP LLADIPGIHR LTLEVGARYA DYSSVGTVFT FKAGGSWEPF
ADLRLRSLYQ RATRAPSVFE LFQGGDTSAQ TFTDPCATIA PTGSVLPAPS AAVATICQLQ
GLADPRTNGF TQVSRTLDVN SVGNANLREE TSRTITAGAV FTPHWLPGLT LSVDYYRIKV
SDYINRAFSG VNGVIANCFA SGVTTATALA AQPACQLLAR RASGELTATL PLANVQTLKT
SGLDIQANYA LPLDRIGLGD VGTIDLAGTA TYLRDYKTVG QDYVGRISQN FGGIPKWRTS
VDLGWRNDDA GVRLQWRRIG GMVEDISQRH IPAVNYFDLN GRLEVGERIE FYGGINNLFD
RKAPLVPNQI FNSDTQNYDI VGRYLFIGAK LRFRP
|
|---|
| |