Gene Swit_1863 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1863 
Symbol 
ID5200006 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp2086144 
End bp2087436 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content69% 
IMG OID640581408 
Productmajor facilitator transporter 
Protein accessionYP_001262361 
Protein GI148554779 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00883] metabolite-proton symporter 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.175149 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.401797 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGGGA TCGCGCGTGG CGGCGACGGT AGCCAGCGGC CGGCGCCCGG ATCGCCGCTC 
AAGTCGATCG TCGGCGGATC GATCGGCAAT CTGGTCGAAT GGTATGATTG GTATGTCTAT
GCGGCGTTCA GCCTCTATTT CGCCGCGCGC TTCTTTCCCG CCGAGGATCG CACGACCGAG
CTGATGAACG CGGCGGCGGT GTTCGCCGCC GGCTTCCTGA TGCGCCCGGT CGGGGGCTGG
CTGATGGGGC TCTATGCCGA CCGGCGCGGA CGCAAGGCGG CGCTGACGAC GTCGGTGCTG
CTGATGAGCG CTTGTTCCTT CGTCATCGCC ATCCTGCCCG ACTATGACCG GATCGGTATC
GCGGCGCCGG CGATCCTGCT GCTGATGCGG CTCCTCCAGG GGTTGAGCGT CGGCGGCGAA
TATGGCGCGA GCGCCACCTA TCTGAGCGAG ATGGCGCCGC CCGGACGGCG CGGCTTCTAT
TCGAGCTTCC AATATGTGAC GCTGGTCGGC GGCCAGCTCC TCGCGCTGGC GCTGCTGTTG
CTGCTCCAGG CGCTGCTCGA TCCGGCGAGC CTCGCGGAGT GGGGATGGCG CATCCCCTTC
GCGGTCGGCG GTGTACTGGC GCTGGTCGCC CTCGCCATGC GGCGCGGGCT GGAGGAGACC
AGCGCCTTCG CCGAGGCCGA CCGCAAGGGC GGGGTGGGGC GGCTGCTGCG CGAGCATCCC
CGCGCGGTCG CGATCGTCGT CGGGATGACG GTCGGCGGGA CGGTCGCCTT CTACACCTTC
ACCACCTACC TCCAGAAATT CCTCGTCAAC AGTGCCGGAT GGACGCCGGG CGACGCGACC
CTGCTGTGCG CGCTGGCGCT GCTGCTGTTC CTGCCGCTCC AGCCGCTGTT CGGGGCGCTG
TCGGACCGGA TCGGCCGCCG GCCGCTGCTG ATCGGCTTCG GCCTGCTCGG CAGCGTGACG
ACGATCCCGA TCCTGTCGCT GCTCCAGCAT GTCCGCGATC CGCTGGCGGC CGGCGCGCTC
GTCATGGCGG CGCTGGTGAT CGTCAGCGGC TACACCTCGA TCAATGCGAT CGTGAAGGCG
GAGCTGTTCC CGCCGTCGGT GCGCGCGCTG GGCGTCGGCC TGCCCTATGC CGTCACCGTC
TCGCTGTTCG GCGGCAGCGC GGAGTTCATC GCGCTGGCCG CCCGCGCGCT CGGCCGGGAG
GAACTGTTCT ACCTCTATGT GACGGGCTGC ATCCTCGTCT CGCTGGTCAC CTATGTCGCC
ATGGGCCGGC TGGACGCGCG CGACACCTTC TGA
 
Protein sequence
MTGIARGGDG SQRPAPGSPL KSIVGGSIGN LVEWYDWYVY AAFSLYFAAR FFPAEDRTTE 
LMNAAAVFAA GFLMRPVGGW LMGLYADRRG RKAALTTSVL LMSACSFVIA ILPDYDRIGI
AAPAILLLMR LLQGLSVGGE YGASATYLSE MAPPGRRGFY SSFQYVTLVG GQLLALALLL
LLQALLDPAS LAEWGWRIPF AVGGVLALVA LAMRRGLEET SAFAEADRKG GVGRLLREHP
RAVAIVVGMT VGGTVAFYTF TTYLQKFLVN SAGWTPGDAT LLCALALLLF LPLQPLFGAL
SDRIGRRPLL IGFGLLGSVT TIPILSLLQH VRDPLAAGAL VMAALVIVSG YTSINAIVKA
ELFPPSVRAL GVGLPYAVTV SLFGGSAEFI ALAARALGRE ELFYLYVTGC ILVSLVTYVA
MGRLDARDTF