Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1863 |
Symbol | |
ID | 5200006 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2086144 |
End bp | 2087436 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640581408 |
Product | major facilitator transporter |
Protein accession | YP_001262361 |
Protein GI | 148554779 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.175149 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.401797 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGGGA TCGCGCGTGG CGGCGACGGT AGCCAGCGGC CGGCGCCCGG ATCGCCGCTC AAGTCGATCG TCGGCGGATC GATCGGCAAT CTGGTCGAAT GGTATGATTG GTATGTCTAT GCGGCGTTCA GCCTCTATTT CGCCGCGCGC TTCTTTCCCG CCGAGGATCG CACGACCGAG CTGATGAACG CGGCGGCGGT GTTCGCCGCC GGCTTCCTGA TGCGCCCGGT CGGGGGCTGG CTGATGGGGC TCTATGCCGA CCGGCGCGGA CGCAAGGCGG CGCTGACGAC GTCGGTGCTG CTGATGAGCG CTTGTTCCTT CGTCATCGCC ATCCTGCCCG ACTATGACCG GATCGGTATC GCGGCGCCGG CGATCCTGCT GCTGATGCGG CTCCTCCAGG GGTTGAGCGT CGGCGGCGAA TATGGCGCGA GCGCCACCTA TCTGAGCGAG ATGGCGCCGC CCGGACGGCG CGGCTTCTAT TCGAGCTTCC AATATGTGAC GCTGGTCGGC GGCCAGCTCC TCGCGCTGGC GCTGCTGTTG CTGCTCCAGG CGCTGCTCGA TCCGGCGAGC CTCGCGGAGT GGGGATGGCG CATCCCCTTC GCGGTCGGCG GTGTACTGGC GCTGGTCGCC CTCGCCATGC GGCGCGGGCT GGAGGAGACC AGCGCCTTCG CCGAGGCCGA CCGCAAGGGC GGGGTGGGGC GGCTGCTGCG CGAGCATCCC CGCGCGGTCG CGATCGTCGT CGGGATGACG GTCGGCGGGA CGGTCGCCTT CTACACCTTC ACCACCTACC TCCAGAAATT CCTCGTCAAC AGTGCCGGAT GGACGCCGGG CGACGCGACC CTGCTGTGCG CGCTGGCGCT GCTGCTGTTC CTGCCGCTCC AGCCGCTGTT CGGGGCGCTG TCGGACCGGA TCGGCCGCCG GCCGCTGCTG ATCGGCTTCG GCCTGCTCGG CAGCGTGACG ACGATCCCGA TCCTGTCGCT GCTCCAGCAT GTCCGCGATC CGCTGGCGGC CGGCGCGCTC GTCATGGCGG CGCTGGTGAT CGTCAGCGGC TACACCTCGA TCAATGCGAT CGTGAAGGCG GAGCTGTTCC CGCCGTCGGT GCGCGCGCTG GGCGTCGGCC TGCCCTATGC CGTCACCGTC TCGCTGTTCG GCGGCAGCGC GGAGTTCATC GCGCTGGCCG CCCGCGCGCT CGGCCGGGAG GAACTGTTCT ACCTCTATGT GACGGGCTGC ATCCTCGTCT CGCTGGTCAC CTATGTCGCC ATGGGCCGGC TGGACGCGCG CGACACCTTC TGA
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Protein sequence | MTGIARGGDG SQRPAPGSPL KSIVGGSIGN LVEWYDWYVY AAFSLYFAAR FFPAEDRTTE LMNAAAVFAA GFLMRPVGGW LMGLYADRRG RKAALTTSVL LMSACSFVIA ILPDYDRIGI AAPAILLLMR LLQGLSVGGE YGASATYLSE MAPPGRRGFY SSFQYVTLVG GQLLALALLL LLQALLDPAS LAEWGWRIPF AVGGVLALVA LAMRRGLEET SAFAEADRKG GVGRLLREHP RAVAIVVGMT VGGTVAFYTF TTYLQKFLVN SAGWTPGDAT LLCALALLLF LPLQPLFGAL SDRIGRRPLL IGFGLLGSVT TIPILSLLQH VRDPLAAGAL VMAALVIVSG YTSINAIVKA ELFPPSVRAL GVGLPYAVTV SLFGGSAEFI ALAARALGRE ELFYLYVTGC ILVSLVTYVA MGRLDARDTF
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