| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1854 |
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| Symbol | |
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| ID | 5199393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2073703 |
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| End bp | 2074476 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640581399 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001262352 |
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| Protein GI | 148554770 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.00947087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCCATC CCGCATCACT CGACAACAAG GCCATCCTCG TCACCGGCGC GGCGCGCGGC
ATCGGCAAGG CGCTGGCCGA CCACGCGATC CGGATGGGCG CGCGGATCGT CGCGGTCGAC
ATCGATGGCG ACGCGCTGGA GGAGAGCTTC GCCGGCCATG ACGCGGGGAC GGTGCGGCGC
TATGCCGGCA ACATCACCGA CGAGGATTTC GTCGCCCGCG TCGTCGATGA CGCCGCCGCC
GCGTTCGGCG GGATCGACGG GCTGGTCAAC AATGCCGGGA TCGTCCGCGC GGCGATGATC
ACCGACATGA AGCGCGATCA GTGGCAGGCG GTGATCGACG TCAACCTGAC CGGCGTGTTC
GTCTGCCTCC AGGCGGTCGG CCGCCACATG ATCGCCCGGG CGAAGGCCGG CGCCGCCAAT
CCCGGCTCGA TCGTCAACAT ATCGTCCGAC GCCGGCCGGC GCGGGACCTT CGGCCAGATC
AACTATGGCG CGGCCAAGTC CGGCGTGCTG GGGCTGACGA TGAGCGCAGC GCGCGAATGG
GGGCGGTACA ACATCAACGT CAACAGCGTC TGCTACGGCC TGGTCGAGAC CGCGATGACC
GAGACGATCC GCGAGGAGAA GTTCCGCCAC CGCTATCTCG ACGCGATCCC GCTCGGCCGC
TTCTCCGCGC CCGAGGAGAT CGCCCCGGCG ACCTGCTTCT TCCTGTCCGA CGCGGCGTCC
TACATCACCG GCCAGCATAT CGCGATCGAC GGCGGCTTCC ACATCACCGC CTGA
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| Protein sequence | MTHPASLDNK AILVTGAARG IGKALADHAI RMGARIVAVD IDGDALEESF AGHDAGTVRR
YAGNITDEDF VARVVDDAAA AFGGIDGLVN NAGIVRAAMI TDMKRDQWQA VIDVNLTGVF
VCLQAVGRHM IARAKAGAAN PGSIVNISSD AGRRGTFGQI NYGAAKSGVL GLTMSAAREW
GRYNINVNSV CYGLVETAMT ETIREEKFRH RYLDAIPLGR FSAPEEIAPA TCFFLSDAAS
YITGQHIAID GGFHITA
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