| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1747 |
|---|
| Symbol | |
|---|
| ID | 5198503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 1954609 |
|---|
| End bp | 1956924 |
|---|
| Gene Length | 2316 bp |
|---|
| Protein Length | 771 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640581295 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001262248 |
|---|
| Protein GI | 148554666 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAGCA CATTCGCGAT ATTGGTCACC GGCTTCTGCG CCACGAGCGC GCATATGGCG
CTGGCCCAGA CGGCGGCGCC CGCCGCCGCG GCGGCGTCCG AGGTCGTGGA CGATACGTCC
CAGGGGCTGG GTGACATCGT CGTCACCGCC CAGCGCCGCG AGCAGCGGCT CCAGGACGTT
CCGGTGACGG TCAACGCCAT CTCCGCCCAG GGCCTCGAAC GGCAGGGCAT CACCAACACG
GCCGATCTCA ACGCCGTGGT CCCCGGCCTG AACATCGCCA AGTCGAGCAC GGTCGTGCAG
CCCTTCCTGC GCGGCGTCGG CACCGCGTCG CTGGTCCCCG GCAACGATCC GAGCGTGCCG
CTCTACATCG ACGGCGTCTA TCATTCGGCG CCGGCCGCCC TGTTCTTCTC GTTCAACAAC
ATCGAGCGCG TCGAGGTGCT CAAGGGGCCG CAGGGCACCC TGTTCGGCCG CAACGCCACG
GGCGGCCTGA TCCAGGTCAT CACCAAGGAT CCGACCCAGG AGCTCTCGGG CAAATTCTCG
CTCAGCTACG GCAATTACCG CGCGGTCAAC GCCACCGGCT ACATCAGCGG GGGCACCGAC
ACGATCGCCG CCGACCTGGC CGTGGTCTAC AACAACCAGT CGAAGGGCTG GGGTCGCAAC
ACCTACCAGG CGGGCGAGGG CGGGCCGATC GTCGTCGGCG GAACCACCTT CACCGATCGC
AAGGTCAAGC GGGCCGCGGG CTACACCGAC GAGTTCGGCA TCCACAGCAA GATCGTCATG
ACCCCCGGCG ACCGGACGAC GGTCAAGCTC AGCGGCATGT ACATCGATGT CGACACCAAC
CAGAACCACT ATCGCCACCC GCTGCCGGGC CGGCTGCTCC CGGGGCCGCC GGGGCAGAAT
CCCTACAGCT TCACGGGCGG CTTCTACGAC TATGACTCGG ATATCGAGTG GTTCAATCGC
AACCATCAAT ATCTGTTCAC CGCGGAGGCC CAGCACGAGG CCGATTTTGC GACCATCAAG
TCGATATCCT CCTATCTGAA GGCGAAGGCC GAGATTTCGG TGCCGTCGGA CGGCAGCCCG
CTGATCTCGC GCGCCAGCAG CTTCGCGCAT CTGCGGTGGA AGACCTTCAC GCAGGAACTC
CAGATCCTGT CGAACAAGGA CTGGGGCCCC TCCTGGCTCG AATGGATCGG CGGCCTCTAT
TATCTGAACA GCCGCGCCGG CTATGATCCG CAGGAAGTGA CCTACGGCTA TCGCTACGAC
GGCACGTTCA ACCGCTATTC GTTCCAGACC TCGGATTCGC TGGCGGCCTA TGGCCAGGCG
ACCGCGAGCC TGACCCCGAC CACGCGCCTG ACCCTGGGCC TGCGCTACAG CAAGGACCGG
CTGGCCGCCA CGCAATATCA GCTCGGCACC TCCGCCGTCC TGGGCGGCGG CAACGCCAAC
GGCGCGGTCA CGATCCTCGT GCCCAAGGTG CGGACGACGT TCGACAAGAT CACCTGGCGC
GTCGCGCTGG ACCAGCGGTT GACGCCCGAC GTGCTGCTCT ATGCCAGCGC CAGCCGCGGC
TACAAGACCG GCGCGTGGAA CCATGGCGCG CTCTGCGCCA CGACGCCGCC GGTGGGCGTC
GCTTGCAGCA ACCTGGTCTT GCCGACCCGG CCCGAGGTGC TCGACGCCTA TGAGATCGGC
CTGAAGTCGG ACCTGTTCGA CAAGCGCCTG CGGTTCAACA TCTCGGGCTA TTATTATGAT
TATTCGGACC TGCAGGTGCA GGCGGTGGTC GGCGTGCCGC CGATCAGCGT GCTCAACAAC
GCCGCGTCGG CCCGGATGTA CGGCATCGAC GTCGAGACGG CCTTCCAGTT CAATCGCTAT
CTGCGGATCT CGGCGAACGG CGCCTATCTC GACGCCAAGT ACAAGAAATA TCCGAACGCG
GTCGGCTTCA TACCGCTGAC GGTGGCGCCC TATGCCAATT CGCAGATATT GTTCGACGCT
TCGGGCAACA GGCTGCCCCG CGCCCCGAAG TTCACCAGCA CGGTCTCGGT CGACTGGACC
ATTCCGACCG GCGCCGGCGA CGTGACGCTG ACGGGGAGCT GGTATTACAA CAACGGCTTC
TACTGGGATC CCCAGGAGCG GCTGAAGGAG CGGGCCTACA GCCTCGTCAA CGGCCAGATC
GCGCTCAAGG CGACCGACAA TCTCAGCCTG CGGATCTGGG GCCGGAACCT GCTCGACAAG
AAATATTACA GCTACCAGAC CGCGACCAGC GCGGGCGACC AGGGCGCCCC GGCGGCCCCG
CGCACCTACG GCCTCGCGGT GGACTTCCAG TTCTGA
|
|---|
| Protein sequence | MRSTFAILVT GFCATSAHMA LAQTAAPAAA AASEVVDDTS QGLGDIVVTA QRREQRLQDV
PVTVNAISAQ GLERQGITNT ADLNAVVPGL NIAKSSTVVQ PFLRGVGTAS LVPGNDPSVP
LYIDGVYHSA PAALFFSFNN IERVEVLKGP QGTLFGRNAT GGLIQVITKD PTQELSGKFS
LSYGNYRAVN ATGYISGGTD TIAADLAVVY NNQSKGWGRN TYQAGEGGPI VVGGTTFTDR
KVKRAAGYTD EFGIHSKIVM TPGDRTTVKL SGMYIDVDTN QNHYRHPLPG RLLPGPPGQN
PYSFTGGFYD YDSDIEWFNR NHQYLFTAEA QHEADFATIK SISSYLKAKA EISVPSDGSP
LISRASSFAH LRWKTFTQEL QILSNKDWGP SWLEWIGGLY YLNSRAGYDP QEVTYGYRYD
GTFNRYSFQT SDSLAAYGQA TASLTPTTRL TLGLRYSKDR LAATQYQLGT SAVLGGGNAN
GAVTILVPKV RTTFDKITWR VALDQRLTPD VLLYASASRG YKTGAWNHGA LCATTPPVGV
ACSNLVLPTR PEVLDAYEIG LKSDLFDKRL RFNISGYYYD YSDLQVQAVV GVPPISVLNN
AASARMYGID VETAFQFNRY LRISANGAYL DAKYKKYPNA VGFIPLTVAP YANSQILFDA
SGNRLPRAPK FTSTVSVDWT IPTGAGDVTL TGSWYYNNGF YWDPQERLKE RAYSLVNGQI
ALKATDNLSL RIWGRNLLDK KYYSYQTATS AGDQGAPAAP RTYGLAVDFQ F
|
|---|
| |