Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1722 |
Symbol | |
ID | 5197960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1923654 |
End bp | 1925957 |
Gene Length | 2304 bp |
Protein Length | 767 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640581270 |
Product | TonB-dependent receptor |
Protein accession | YP_001262223 |
Protein GI | 148554641 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATCAATA TCAACCGGAC ATATCTATCG ATAACCATGA TGTCGGTGCT GCTCTGCGGG GCCTCGCAAG CAGCGATTGC CCAACAGGCC GCGGTGGATG CCCAGAATTC CGGCGATATC ATCGTCACCG CGCGCATGAG ATCGGAAGCG CTGCAGAATG TTCCTGCATC GCTCAGCGTC TTTTCTTCGA AGCAGATAGA AAACGCGAAG ATCGAGCGGC CCGGCGATTA TATCGCGCTG ACGCCCAACG TCACCTTCTC GACCGCGCAG GATGCCGGCA CCACCTATCT CACCGTGCGC GGCATCAGCC AGGTGCCCAA TGGCGAGACC CCGGTCGCGA TCTCGGTCGA CGGCGTGCTG CAGACGAGCG CGTTCCAGTT CAACGAGGAA CTGTTCGACA TCCAGCAGAT CGAGGTGCTG AAGGGGCCGC AGGGCGCGCT CTACGGCCGC AACGCCATCG CCGGCGCGAT CAACATCACC ACCAAGCCCG TCACCAACGA TTATGAGGGC CGCGTCGCCT TCGGCTATGG CAACGGCCAG GCGACCCGCG CCGAAGGCTC GGTCTCGGGA CCGATCATCA AGGACAAGCT GCTGTTCCGC GCGGGCGTCT CCTATCGCGA TGCCGACGGC TGGATCACCA ACCGCTTCCT CGACAGGAAG GTCGACGACT TCCGCAACAT CGGCGCGGAC CTCAAGCTGA TCTACGAGGC GACCCCGGAC CTGACCTTCG ACCTGCGCGG CCATTATGGA CGGATCACGG GCGGCGCGGC CTATTTCGTC CGGTCGAGCA ACGCCGCCCA GCAGGGCGTC GTCATCACCG ATGCGCATGG CGTCGCCAAC ACGGTGATCG CGCCGACCTC GAACAATCTC GGCTACAACA AGCGGCTGTT GAAGAACGTC TCGTTCAAGA TCGACTATGA CACCGGCTTC GGCAGGCTTT CCTCGATCAC CGCCTATGAC GCGATCGACC TGCTGACGAC GTTCGACGGC TATGATTATT CGGACAACCA GAACTGCTTC GAGCTGACCT CGCCGCTGTC GACGCCCTAT GCCTGCGCCA ATCCGCAGAT CACCTTCGGC GGCCTGAACG GCGGCACGCC CTTCTTCACG GCGCCGTTCA ACACCACCTT CCAGCGCTAT CGCCAGCGCA ACTTCAGCCA GGAGCTGCGC TTCACCAGCC CGTCGGACCA GCCGCTCCGC TATATCGCCG GCCTCTATTT CCTCCAGCGC AAGCGCGACC TCGTCACCGC GACGCAGGAG GACAAGGGCT TCGGCATCGT TCCCGAACTC GATTTCGATC CGGCGACGGC CAACCAGACG CGCGCCTATT TCGAAGAGCA CAACAACGAC AAGGCCTATG CCGCCTTCGC CCAGGCGAAC TACGACGTGA CCAAGACGAT CGAGCTGTCC GCGGCGATCC GCTACGACAC CGATCACCGC CGGCAGACCG ATCCGCGACC CGACATCTAC CGGCTCGACG GCCTCGGCCG GCCGATCACG GGGCCGCGCA CCCGCAAGCA GAATTTCGAC GCGTGGCAGC CCAAATTCAC GATCAACTAT CGCCCGCTGC GGACCTTCTC GATCTACGCC AACTATGCGA AGGGCTTCCG CTCGGGCGGC TTCAACGCCG CCGGCACCGA GCTCGATCCC TCGACCGGCG CGAAGGTGGC CGATCCGATC TTCAAGAAGG AGATGTCGGA GACCTACGAG GTCGGCTTCA AGAGCGAGCT GCTCGATCGC GCCCTCTCGA TCAGCGGCGC GCTGTTCCAG ACCGATGCGA AGAACCTGCA GGTGTTCAAC TTCAACGGCG TCGTGAACGC GCAGGTCGTC AACAATATCG ACAAGGCGCG GATCAAGGGC GCCGAGCTCG AGGTGCAGGC GAGGCTGCCC GAGGGCTTCG CCCTGTTCGG CGGCCTCGGC TATACCGACA CCAATATCCG GAAATATGAC GCCAATCCGA CGACCGTCGG CAACCAGCTA CCCAACACCA CCAAGTTCAA GACCAACATG TCGCTGCAAT ATACGCGCGA CATCGGCACG TCCGAGCTGC TGATCCGCGG CGACTGGGAG CATCGCGGCA AGACCTATTT CCACGAGGGT GGCACCCCGA TCGGCATACC GATCCGCGAC CCGCTCGACC TGTTCAACGG CCAGGTCAGG CTGACCCTCG CGAGCGGCTG GAGCGCGTCG CTGTGGGGCA AGAACCTCTC GAACAAGAAA TATTACGATA AGGTCGTGGT GCCCGACTAT AATTTCCAGG CTCGGCCCCG CAGCTATGGC ATCGACATCA CGAAGACTTT TTGA
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Protein sequence | MININRTYLS ITMMSVLLCG ASQAAIAQQA AVDAQNSGDI IVTARMRSEA LQNVPASLSV FSSKQIENAK IERPGDYIAL TPNVTFSTAQ DAGTTYLTVR GISQVPNGET PVAISVDGVL QTSAFQFNEE LFDIQQIEVL KGPQGALYGR NAIAGAINIT TKPVTNDYEG RVAFGYGNGQ ATRAEGSVSG PIIKDKLLFR AGVSYRDADG WITNRFLDRK VDDFRNIGAD LKLIYEATPD LTFDLRGHYG RITGGAAYFV RSSNAAQQGV VITDAHGVAN TVIAPTSNNL GYNKRLLKNV SFKIDYDTGF GRLSSITAYD AIDLLTTFDG YDYSDNQNCF ELTSPLSTPY ACANPQITFG GLNGGTPFFT APFNTTFQRY RQRNFSQELR FTSPSDQPLR YIAGLYFLQR KRDLVTATQE DKGFGIVPEL DFDPATANQT RAYFEEHNND KAYAAFAQAN YDVTKTIELS AAIRYDTDHR RQTDPRPDIY RLDGLGRPIT GPRTRKQNFD AWQPKFTINY RPLRTFSIYA NYAKGFRSGG FNAAGTELDP STGAKVADPI FKKEMSETYE VGFKSELLDR ALSISGALFQ TDAKNLQVFN FNGVVNAQVV NNIDKARIKG AELEVQARLP EGFALFGGLG YTDTNIRKYD ANPTTVGNQL PNTTKFKTNM SLQYTRDIGT SELLIRGDWE HRGKTYFHEG GTPIGIPIRD PLDLFNGQVR LTLASGWSAS LWGKNLSNKK YYDKVVVPDY NFQARPRSYG IDITKTF
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