| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1702 |
|---|
| Symbol | |
|---|
| ID | 5196796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 1899294 |
|---|
| End bp | 1901660 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640581250 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001262203 |
|---|
| Protein GI | 148554621 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0806074 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGATCCA TCCTTTTTGC GCAAAGGAAC GAACATGCGA TCGGACGAGC GAGACAGGGC
GTGACATCGC GCACCTTGCA TGGGTATTCG CCAGCAGGGG GATTGGTCCG GGCGGACCGG
AAATGCGGGG CGATGGGATT TCAGGGCAAG CGCTACGGAT CACGGCCGGC CACGCAGCGC
CAGCCCAGGA CGGCCCGCCT GGCCGCCCTG GCGATGGCGC TGCTGCCCGC CGCCGCCGCC
GCCGAAGCCG TGGGCGAAGG GGCCGGGAAC GGCCTGCCCG ATATCGTCGT CTCGGCCCAG
AAGCGCAGCG AAAACGTCCA GCGGGTGCCG ATCTCGATCC AGAGCTTCGA CAGCCAGGCG
CTCGACAGGC TGGGCGCCGG GCAGTTGACC GACCTCGACG CGATGGCGCC CTCGCTCTCC
TTCGGCGACG GCAACGAGCA GGGCCGGACC GGCATCCGCG GCATCATCGA TTATTCGCGC
AACGCGGGCT ATGATTCGCG CGTGGGCCTC TATGTCGACG GGGTCTATTA CAGCCGTTCT
TGGATGACGC CGCTCACCCT GCTGGGCATC CGCCAGGTCG ACGTGCTGCG GGGGCCGCAG
GGCACGCTGT TCGGCAAGAA CACCGATGCC GGCGTGCTCT CGATCACCAC GATCCAGCCC
TCCGCGCAGC CGAACGGCGA GATCAAGGCG GAGGTCGGCA ATTTCGGCTA TTGGCGCGTC
GCCGGGCGGG GCAACGCGCC GCTGGGTCCG AAGGTCAGCC TGCAACTGGC CGGCAGCCAT
GCGGAGAGCA CCGGCTATTA CCGCAATGTC CTGCTGGGCA AGCACAATAG CGGCGTGAAT
GCCGACATGA TCCGCGCGCA GCTCCGCTTC CAGCCGAGCG ACGACCTCGA CGTGACGCTG
GCCGCCGACT ATGCCGCCGA CGACAATTCC ACCCTCCACT ACACCTATGT CCCGCCCGCC
GGGACCGATC CGTTCGCCTT CGCCTCCTAT TGGGACGACC GCGCGACGCG GCGGACGGGG
GGCGCTTCGC TGACCGTGCG CAAGGACGTC GCCGGCGGCT TCCAGATCAC CTCGATCACG
GCCTACCGAT CGGGCCACCA GTTCCTGTAC TTCAACAACG AGACCGGGCC GGTCCCCTAT
CTGACGACCG GCCTGATCCA ATATGCCGAC CAGTTTTCGC AGGAGGTGCG GATCGCCTCG
CCGCGCACCG AAAACCATGA TTTCGTCGCG GGCCTCTATT ATTTCTGGGG GAACAACAAG
GATCGGCAGT CGCTGGCCGC CGGATCGGGG CTGGGCGCGC TCGGCCTCGG CGGCCTGGTC
GGCAAGGCTT CCCTGACCCG CACCTCGGTC AGCACCGGCT CGGTGGCCGG CTTCTTCCAG
GCGAGCTTCC GCCCGGTCCC GATGATCGAG CTCTTCGTCG GCGCGCGCCT GACCTATGAG
AGGAAGAAGC TCAACGACAT CACGACGAAC GACCCCACGG GTTTCATCGC CATCCCGATC
ACCGGCTATC GCGACCGTTT CTCCGACAGT TTCCTGACGC CGAAGGGGGG CATCAACCTG
CACCTCGGAC CCGATCTCGT CCTGTTCGGC ACGATCGGGC GCGGGGTCAA GAGCGGCGGC
TGGAACGTCG AGGGGACGAC CGCGTCGACC TTCGCCGCCG GCATCCGGTT CCGGCCCGAG
ACCGTGACCA GCTATGAAGC CGGGTTGAAG AGCGAGTTCC TCGATCGCCG AGCGCGCCTC
AACATCACCG GCTTCTACCA GAGGTTCGAG GACTTCCAGG TCTTCACCTT CGTCAACACG
GTGGTGGCCG GCCGCACCGT CCAGGCCACC AGCCTGTCGA ACGTCGGCAA GGTCACGTCG
AAGGGCGTCG AGATCGATCT CGCGCTGATC CCGGTCGAAG GGCTCACCCT GTCCGGCAAC
TACACCTACA ACAAGAGCGC CTACGACCAT TATCCCGGCG GCGGAGGCAT GGTCGGCACG
ACGATCCTCG ACGCCGACGG CGTCCAGACC CCCTATGCGC CCACCCACAA GGCCTATCTC
GCCGCGGACT ATGAGACGCC GCTCGCGAAG GGTGGCCCGC TGCTCTTCGC GCATGTCGGC
TACAGCGTTC AATCCTCCGA GAATTTCGAT CCGAAGGTGG TGAATCCCAC CGTCGGCAGC
GCCTATTTCA TCAAGGGCTA CGGACTGGCC GATGCGCGGC TGGGCATCGG TTTCGCCGGC
GGGCGCTGGC GAGCCTCTCT CTGGAGCCGG AATCTGTTCG ACAAGCGCTA TGTCCGTTTC
GCCACCCGAA CCGTGCTGCT CCGCGCGCCC GCCATTCTCT ATGGGGAGCC GCGAAGCTAT
GGCGTGACGC TCAGCGCCAC TTTCTGA
|
|---|
| Protein sequence | MRSILFAQRN EHAIGRARQG VTSRTLHGYS PAGGLVRADR KCGAMGFQGK RYGSRPATQR
QPRTARLAAL AMALLPAAAA AEAVGEGAGN GLPDIVVSAQ KRSENVQRVP ISIQSFDSQA
LDRLGAGQLT DLDAMAPSLS FGDGNEQGRT GIRGIIDYSR NAGYDSRVGL YVDGVYYSRS
WMTPLTLLGI RQVDVLRGPQ GTLFGKNTDA GVLSITTIQP SAQPNGEIKA EVGNFGYWRV
AGRGNAPLGP KVSLQLAGSH AESTGYYRNV LLGKHNSGVN ADMIRAQLRF QPSDDLDVTL
AADYAADDNS TLHYTYVPPA GTDPFAFASY WDDRATRRTG GASLTVRKDV AGGFQITSIT
AYRSGHQFLY FNNETGPVPY LTTGLIQYAD QFSQEVRIAS PRTENHDFVA GLYYFWGNNK
DRQSLAAGSG LGALGLGGLV GKASLTRTSV STGSVAGFFQ ASFRPVPMIE LFVGARLTYE
RKKLNDITTN DPTGFIAIPI TGYRDRFSDS FLTPKGGINL HLGPDLVLFG TIGRGVKSGG
WNVEGTTAST FAAGIRFRPE TVTSYEAGLK SEFLDRRARL NITGFYQRFE DFQVFTFVNT
VVAGRTVQAT SLSNVGKVTS KGVEIDLALI PVEGLTLSGN YTYNKSAYDH YPGGGGMVGT
TILDADGVQT PYAPTHKAYL AADYETPLAK GGPLLFAHVG YSVQSSENFD PKVVNPTVGS
AYFIKGYGLA DARLGIGFAG GRWRASLWSR NLFDKRYVRF ATRTVLLRAP AILYGEPRSY
GVTLSATF
|
|---|
| |