Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1688 |
Symbol | |
ID | 5199222 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1880202 |
End bp | 1882526 |
Gene Length | 2325 bp |
Protein Length | 774 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640581236 |
Product | TonB-dependent receptor |
Protein accession | YP_001262189 |
Protein GI | 148554607 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATGTTTT CCTCGAAGCT GATGTTGAGT GCCACGACCG CACTGGCTCT TCTTCCCTCC GCCGGCGCGC TTGCGCAGAA GGCCGGCCCC GCTGCCGTCG AAGCCGCCCC GGCCGAAGCG GCGCCGCGGA CGTCCGACGC GGAGATCGTC GTCACCGCGC AACGCCGCCA GCAGCGGCTT CTGGACGTTC CGATCAGCGT GTCGGCCTTC TCGGCATCGA TGATCGAAAA GGCCCACATC ACGGAGGCCA AGGACTATCT GGCGCTGGCC CCGAACATCA GCTTCACCGA GGATGGAGAG AAGGGCAACC GCTCGATCAA CATCGCGATC CGCGGCGTCA GCAACGTCGA CCTCGGCGAG CAATCGACCC AGCAGTCGAT CGGCTATTAT ATCGACGAGC TGAGCACCGG CTCGTCCGCC AACGGCACGC TCAACCCGCA GCTCCTCGAC ATCGAGCGGA TCGAGGTGCT GCGCGGTCCG CAGGGCACCT ATTTCGGCCG CAACGCCTCG GGCGGCGCGA TCAACATCAC CACCAAGAAG CCGACCGACT CGCTCTATGC CGAGGGCGGC CTCGAATATG GCCGCTTCGA CACGCAGAAG GTCTACGGCA TCTTCAACGC GCCGCTGGCC TCCAACCTGT TCTTCCGTGG TCTCGCCTCC TATGAGAAGA GCGACGGCCT CATCCGCAAC CTCGATCCGC GCGGGACGCC GAACAGCGGC TACAAGAATC TCCACCTTCG GGGCGCCGTG CGCTTCGTCC CGACCGAGAA TCTGACCTGG GATCTGTCGG TCGACTATGC GCGGGACCGC AACGGCATGG ATGCGACGGT GCCGTCGGGC GTGCTCGACC TCGACACCAA GAGCATCTTC GGATCGGATT TCCAGGCGAT CGACGAAGGC GAGGGCTTCT ATCCCGCCAA CCAGCGCAAC GTCCGCCACA ACACCCGCGA ATGGAACAAC AACAGCGCGA CGATCATCAA CAACCGGCTG ACCTGGAAGG GCGACGATTT CTCGATCCAC TCGATCACCG GCTATATCGA CAGCAGCAAC AGCCGTCAGT TCGACCAGGA CAATATCTCG GTCGACGCCC TCTATCGCCA CAACCGCAAC AGCGGACGGT CCTTCAGCCA GGAACTGCGC GTCCAGTCGG AAGGGACGAC GGCGATCGAA TGGGTGGTGG GCGGCCTGTA CGCCAATGAC CGCATCCGCC AGTTCAACAG CATCCGCGCC GGCACGGAAA CCAGCTACAC CTATCCCGAC GGCACGGTGA TCGGCCTGCT GCCGCCGATC CCGCCGGAGT TCCGGGTCAA CGAGAACAAC AAGATCTTCA AGACGGAAAG CATCGCGGCC TTCGCCGATG CGACCTGGCA TGTCTCGTCG AAGGTCGACC TCGTCGCCGG CGGCCGCTAC ACGCACGACA AGATATCGAA CCGCAACTTC GGCGTGGTGG CGTTCGAATC CCCCGTTCCG GACATCGCGG GAAGCAAGAG CTTCTCGGAC TTCTCGCCGC GCCTGCTCGC GCGCTTCAAG TTCAACCGCG ACAACAATGT CTACGCCTCG GTGTCCAAGG GATACAAGGC CGGCGGCATC GACATCAATT CGGGGTTCGC TTCGCCATTC AGGCCCGAGA CCCTCTGGAA CTACGAAGTC GGCCTGAAGG GCGACCTGCT CGATCATAGC GTGCAATATG GCCTGTCCTT CTTCTACCTG AAGTGGAAGG ACCTGCAGGT CCAGACGAAC TATCTCGCCA TTCCGGGCGA CATCAGTTCC GCGACCGAGC TGACGCTGAA TGCGGCGCGG GCGACGAACA AGGGTTTCGA GTTCGACGTC CACGCCCGGC TTTCGTCGAC CCTGCGCTGG AACGCCGCGT TCGGCTATCT CGACAGCACG TTCAAGAGCT TCCCCGACGC GGTCCTGGCG GGCGGCAACC AGGTCGACCT GACGGGCTAT CGCCTGCCGA AGACGCCGCG CTACACGATC AGCACGTCGC TCGACTATGA CGCGGAAGTG GCCGACGGTG TCAGCCTCTA CCTGCATCCG GAGATCAACT TCCGCTCGGC GGCGCCCGGA GACCTGGAAG GCGTCGCGGC GGTTCCGCTG GCCCTTCCGA GCTTCCCCTA TCAGCCCAAG GCCTATGCCG TCGTGAACAT GTTCGGCGGC GTCCGCTTCG GCCGGTTCGA GATCGGCGGA TATGTCAACA ACCTGTTCAA GGAAGACTAT TACACCGGCA CCGCCGACAA TTTCGGCCTG GGCGGCATCC GCCTCCGTCC GCACCCCCGG ACGTTCGGCG CGACCGCCAA GGTGAAGTTC GGCGCCGACG GATGA
|
Protein sequence | MMFSSKLMLS ATTALALLPS AGALAQKAGP AAVEAAPAEA APRTSDAEIV VTAQRRQQRL LDVPISVSAF SASMIEKAHI TEAKDYLALA PNISFTEDGE KGNRSINIAI RGVSNVDLGE QSTQQSIGYY IDELSTGSSA NGTLNPQLLD IERIEVLRGP QGTYFGRNAS GGAINITTKK PTDSLYAEGG LEYGRFDTQK VYGIFNAPLA SNLFFRGLAS YEKSDGLIRN LDPRGTPNSG YKNLHLRGAV RFVPTENLTW DLSVDYARDR NGMDATVPSG VLDLDTKSIF GSDFQAIDEG EGFYPANQRN VRHNTREWNN NSATIINNRL TWKGDDFSIH SITGYIDSSN SRQFDQDNIS VDALYRHNRN SGRSFSQELR VQSEGTTAIE WVVGGLYAND RIRQFNSIRA GTETSYTYPD GTVIGLLPPI PPEFRVNENN KIFKTESIAA FADATWHVSS KVDLVAGGRY THDKISNRNF GVVAFESPVP DIAGSKSFSD FSPRLLARFK FNRDNNVYAS VSKGYKAGGI DINSGFASPF RPETLWNYEV GLKGDLLDHS VQYGLSFFYL KWKDLQVQTN YLAIPGDISS ATELTLNAAR ATNKGFEFDV HARLSSTLRW NAAFGYLDST FKSFPDAVLA GGNQVDLTGY RLPKTPRYTI STSLDYDAEV ADGVSLYLHP EINFRSAAPG DLEGVAAVPL ALPSFPYQPK AYAVVNMFGG VRFGRFEIGG YVNNLFKEDY YTGTADNFGL GGIRLRPHPR TFGATAKVKF GADG
|
| |