Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1676 |
Symbol | |
ID | 5200274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1866230 |
End bp | 1868509 |
Gene Length | 2280 bp |
Protein Length | 759 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640581224 |
Product | TonB-dependent receptor |
Protein accession | YP_001262177 |
Protein GI | 148554595 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCAGCA GCAAATTCGT CCGCGGCGCA TCGCTGATCG CCATCGCCGG CGCTTTCGCG GCGGTGCCGC CGGCCTATGC GCAAGGCCAG GCCGGGGTCG AGGCGCAATC GGGGCAGGAT GGTTCGTCCG GCGGGCTGGA GGAGATCGTC GTCACCGCCC AGAAGCGTTC GGAAAACGCC CAGAAGGTCG CCGCGACGGT CACCGTGGTC AATGCGGAGG CGCTCGTCGC CGGCGGCGTC ACCGATCTTC GCGGCGTCGC CAGCTTCCTG CCGATGACCA ATCTCAGCCA GGAGAATGTG GTCACGCAGG CCTTCATCCG CGGCATCGGC CAGACCAGCG ACGCGGAGAC CAACGATCCC GCCGTCGCCA CCAATATCGA TGGCGTCTAC CAGTCGCGCT ATACCCTGTC GGGATCGATG TTCGACATCG AGCGGGTCGA GGTCCTGGCC GGTCCGCAGG GCACGCTGTA TGGCCGCAAC GCGGCCGGCG GCGCGATCAA CATCACCACC AAGCTGCCGC AGTTCACGCC CGGCGGCGAG GCCCGGTTCG AGATCGGCAA CTATAACCGC TTCCACGGCT TTGGCGCGAT CAACGTCCCG CTCTCGCAGC AGGTGGCGCT GCGCGGCGCC GTCGATTATC TGCGCCACGA CGGCTACCTC TCCAACGGGC AGAACGCGAA GGACAATCTC GCCGCGCGCC TGACCGCGCT GATCGAGCCC GACAGCGACC TGACGATCGT GCTGCGCGGC GAATATCAGC ATACCGGCGG CGACGGCGAC GGCATCGTGC TGCGCCCGCT CCTCAAGAAG AGCGATCCCT GGTTCCAGCC CGAGATTCCC GGCGAGGACT TCTACGTCCA TCGCAAGGTC TACAAGGGCA ATGCCGAGAT CAAATATCAG GTCGGCGGAC CGGCCAATCT CTCGGTCACC TATATTCCGG CCTATACCTA TTACGACCTG AGCTACCGGT CGCCGATCGG CTACAACCAG CGCTATTATC CGAACCCGGG CGTCGCCGGG AACCCGTTGA CCGGCTTCGC CGGCGCGCTG GAGAATCTCG GCGATACCGG CCGGCAGCTC ACCAACGAGC TGCGCCTGGC GGGCGATACC GGCCGGCTCA ACTTCGTCCT GGGCCTGTTC CAGTTCCGCC AGTCCGCGCA CGGCCCGGGC GTTTCGTTCG AGATCTACAA TCCGGGGGTC TTCTCGGGCG GCTCGTTCAG GCCGTACAGC TTCGCCTCGG GCGGCCCGCA GAACGATCTC AACGTCGTCA CCAACTCGAA GGCGATCTTC GGGCAGGCGA CCTATGCGGT CACCGATGCC CTGCGGTTCA CCGTCGGCGG CCGATATTCT TGGGACAAGC GGCATGCCGA CGGCGTGTCC CAGGGGCTCG TCCCGATCGC GAACATCGCG CTGCCGCCGA TCGTCTACGA CCTGCGCCTG TCGGATAACC GGTTCGACTG GAAGGTCGGC GTGGAGGCCG ACGTCGCGCC GCATTCGATG GCCTACGCCA CCGTGCAGAC CGGCTATATC GGCAGTGGCT TCAACATCAC CTCGAACGCC GCCGCCTCGA CCTTCAAGCC GGAGACGCTC ACCGCCTATA CCGTCGGCCT GAAGAATTCA CTGTTCGGCA ACTCGCTGCG CCTCAACCTC GAGGCCTTCT ATTATGACTA CCGCCAGTTG CAGGTGTCGG CCTACAACAG TGCGTCGGGT TCGGCGCTCC TCTACAATGT GCCGAAGTCG GAGATTTACG GCCTTCAGGT CGACACGACC TGGAAGGCGG GGCCGAACAC GACGTTCACC GCGAACCTCG GTTATCTCCA TGCCACGATC AAGCGGGGCG TGCTGCCACC GGGCGCCGTC TATACCTGCG GGGTTCCGGG CGCCATTCCG GCCGAACTGT GCAACGGCAA CAGCCTGATC GACTATTCGG GCTTCACCCT TCCCAATGCG CCGCGCTGGT CGGGGTCGAC CTCGGTCACG CAGATCTTCC CGCTGGCGTC GGGCGCCGCG ATCGAAGCGC GCGGATCGAT GAACTTCGAA TCCAAGTCCT GGGGCCTGTT CTCGCATCTG GAAGGGCTCG ACAAGCCGGC CTTCGCGAAG ATCGACGCGT CGCTCACCTA CCGGTCGAGC GACGAGCGCT GGGCGCTCGG CCTGTGGGTT CGCAACCTGA CCAACAACGC GCGCTACGTG ACCCCGACCA CGACCAACGT CTACGGGCTG AACACCTGGT TCATCGATGC GCCGCGGACG GCAGGCATGA AGGCCGAGCT GTCCTTCTAG
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Protein sequence | MGSSKFVRGA SLIAIAGAFA AVPPAYAQGQ AGVEAQSGQD GSSGGLEEIV VTAQKRSENA QKVAATVTVV NAEALVAGGV TDLRGVASFL PMTNLSQENV VTQAFIRGIG QTSDAETNDP AVATNIDGVY QSRYTLSGSM FDIERVEVLA GPQGTLYGRN AAGGAINITT KLPQFTPGGE ARFEIGNYNR FHGFGAINVP LSQQVALRGA VDYLRHDGYL SNGQNAKDNL AARLTALIEP DSDLTIVLRG EYQHTGGDGD GIVLRPLLKK SDPWFQPEIP GEDFYVHRKV YKGNAEIKYQ VGGPANLSVT YIPAYTYYDL SYRSPIGYNQ RYYPNPGVAG NPLTGFAGAL ENLGDTGRQL TNELRLAGDT GRLNFVLGLF QFRQSAHGPG VSFEIYNPGV FSGGSFRPYS FASGGPQNDL NVVTNSKAIF GQATYAVTDA LRFTVGGRYS WDKRHADGVS QGLVPIANIA LPPIVYDLRL SDNRFDWKVG VEADVAPHSM AYATVQTGYI GSGFNITSNA AASTFKPETL TAYTVGLKNS LFGNSLRLNL EAFYYDYRQL QVSAYNSASG SALLYNVPKS EIYGLQVDTT WKAGPNTTFT ANLGYLHATI KRGVLPPGAV YTCGVPGAIP AELCNGNSLI DYSGFTLPNA PRWSGSTSVT QIFPLASGAA IEARGSMNFE SKSWGLFSHL EGLDKPAFAK IDASLTYRSS DERWALGLWV RNLTNNARYV TPTTTNVYGL NTWFIDAPRT AGMKAELSF
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