| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1658 |
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| Symbol | |
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| ID | 5200380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1844837 |
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| End bp | 1845616 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640581206 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001262159 |
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| Protein GI | 148554577 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.0536617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0222073 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGACG CCAGATTGCC GTTCGGCCTC GATGATCGGG TCGCCATCGT CACCGGCGCC
GGGCGCGGCA TCGGCCGGGA GATCGCCCGC GTCTTCGCGC GCGCCGGTGC CCATGTCGTC
GTCGCCACCC GCACCGCCGG ACCGGGCGAG GAGACGGTCC AGCTGATCGA GGCGGAGGGC
GGCAGCGCCC GGCTGATGAT CGTGGATCTC GGGCAGCGCG CCGACGCCGT CTCGCTGATC
GAGGAGACCG CCCGCCAGTT CGGCCGCATC GACATCGTTG TGCACAATGC CGGGGTGTTC
CCCTTCGTCA CCGTCGACGA CATTTCCGAC GAGGATCTGG AAAACACCCT CAACGTCAAC
CTGAAGGCCG CCTTCTGGCT GACCAAGGCG GCCGCGCCGA TCCTGCGCGC CTCGCCCTCC
CCGCGCCTGC TGTTCACCTC ATCGCTCAGC GGCCCGCGCT TCTCCGCCGC GACCATGGTC
CATTACGGCG CGTCCAAGGC CGGCCTCAAC GGCTTCATCA AGGGCGCGGC GATCGAATAT
GGGCCCGATC GCATCACCGT GAACGGCGTC GAGCCCGGTG CCATCCTGAC CGACGCGACC
AGGGCGATGG GCGGCCCCGA ACGGCAGGCT GCCGTGGCCG CCGCCATTCC CGCCCGCCGG
CTCGGCGAGC CCGAGGACAT CGCCTACGCC ATGCTCTTCC TGGCGTCGGA TCAGGCCAGC
TATATCACCG GGCAGACCAT CGTCGTCGAC GGCGGCATTT CGATCCGGGT GCCCGTCTGA
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| Protein sequence | MTDARLPFGL DDRVAIVTGA GRGIGREIAR VFARAGAHVV VATRTAGPGE ETVQLIEAEG
GSARLMIVDL GQRADAVSLI EETARQFGRI DIVVHNAGVF PFVTVDDISD EDLENTLNVN
LKAAFWLTKA AAPILRASPS PRLLFTSSLS GPRFSAATMV HYGASKAGLN GFIKGAAIEY
GPDRITVNGV EPGAILTDAT RAMGGPERQA AVAAAIPARR LGEPEDIAYA MLFLASDQAS
YITGQTIVVD GGISIRVPV
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