Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1539 |
Symbol | |
ID | 5198555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 1711586 |
End bp | 1713793 |
Gene Length | 2208 bp |
Protein Length | 735 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640581087 |
Product | TonB-dependent receptor |
Protein accession | YP_001262040 |
Protein GI | 148554458 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000000217846 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00247373 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGGAAAT CGGAAGCGTT ATGCGGTTCG TTGGGCATGG CCCTGCTGGC CGCGTCGTCG GGCGCCTCAG CACAAGTGTC ACAGACATCG AATATAGATG GCGGGATCGC CGATATCGTC GTGACCGCGC AACGCCGCGA GGAATCCGCG CAACGTGCGC CGATCATCCT CAACACGCTC ACCGCCGGCG ACCTGCAGGG CGTGTCCGAC GTGCGCGAGC TGCAATATGC CGTCCCCGGA ATCCAGTTCG CGAACGCCGG CAACGCGGTG CAGACCTACA TCCGCGGCAT CGGGTCGTTC AACGCCAAGT CCGTGCAGGA ATCGGCCGTC GCCTACAGCG TCGACGGCGT GTACCTGTTC ACCACCACCC AGGTCTCGCC GGCGCTTTTC GATCTGACGC GAGTCGAGGT GCTCAAGGGC CCGCAGGGCA CGCTCTACGG CCGCAACGCC AGCGGCGGCG CCGTCAACAT CATCACGCAG GGCGCCAAGC TGGGAGAGAT CGAGGGCTTC GTCTCGGGCG AGGCCGGCAA TTACGACCTG CTGCACCTCA CCGGCGCGGT CAACATCCCC GTCGCGGAGA CCCTGGCCGT CCGATTGGCC GCCCAGCATG TCCGGCATGA CGGCTATCTG AGCGACGGCA CCAGCGACGA CGACACGACC GCCGGGCGGC TTCGCGCACT GTGGGAGCCC CGGAGCAACC TGCAGGTGAA GCTCAACGTC GATATCGCGC GGGTCAGGAC CAAGGGCCCA GGATCGGTCG TCTTCCCGTT CGTCGACCCC GACCATCCCT GGCGCGGCGC GCTCGACCCC GCTCTCGACA CCGGCCTGTC GCGGGTGAGC GGGTTTCGTC CGCTGGAGCG CCCCCGCAAC CGGCTCGATC AGTGGAGTGC GAGCGCCGAA CTCGACTGGG ACTTCGGCTT CGCGACATTC ACATTGCTGC CGGCCTATCG ACACGAGCAT ATCGACCAGG TCAGCTATGT GCCCGGCTAC GGCACCGCGG AGGACGCGCA CATCAAGCAG TCCTCGCTCG AAGCGCGGTT GTCGAGGGAC AGCGGCAAGC TGAAGTGGGT CGCCGGCGCC TATTATCTGG ACGTCGACAT CGCGCAGACC TTCCAGATCA ACAACCCGAC GCCGCCGGTC GGAAGGCCGG CCGTGAACTT CCTCGACAAT CCGAACAAGC TCGAATCCTG GGCCGTGTTC GGCGAGGCCA CTTATGAGCT GACCGAGCGC TTCCGCCTGA CCGGCGGCCT GCGCTATACG TGGGAGCGCT CGATCAGCGG CGGTTTCCAG AACCAGACCT TTCCGGCGCC CCTCGCCACG CCTGCCTTCC TCCCGGGCAC GGAGCCCGGC GACTTCGTCG TCGACGAGCG CGTGACCGAC GACGCGATCA CCTGGAAGGT CGGCGCGCAA TATGACATCG CGGCCGAGTC CACCATCTTC GCAACGGTCA GCCGCGGCTT CAAGGGCGGC GGTTCCTATG TCGACGCCGC GAGCGTCGAT CCGACGTTCG AGCCCGAAAC GGTGGTCGCC TACGAGTTCG GGTCGCGCAA CCGCTTCTTC GACAACAAGC TTCAGGTGAA CCTGGAAGCG TTCTGGTGGG ACATCAAGAA CCAGCAGATC GCGTTTCTCG GCTTCAACTC GCTGAACCAG CCGAAATTCC AGACGGTCAA TGCCGCGAAC GCCAAGGCCT ATGGCGGAAG CGTCGACCTG GTCTGGCGCG CGACCCGCAA CGACACGCTC CGCTTCTCCA CCGAATTCGT GAAGTCGGAT TACAGCAACT TCGTCCGGGT CCAGCCGGCA GCGCCGATCG GGACGCGTTG CGCCACCGCG CCGCTCGCGG GCCGCGTCGC CATCGACTGC TCCGGTTTCC CGATGATGCG GACGCCCAAA TGGGCCGGCT CGGCGGGTTA CGAACACCGC ATCCCCCTCG CCGGCGGCGC CAAGGTGACG CTGGCCGGCG ACATGACCTT TGCCTCGTCG CGCTTCACCT CGATCGACTT CAGTCCGGTG ACGCGCGACA AGGGATATGC GGTGTTCAAT GCCGAAGCGG CCTATCATGC GCCCGACGAT CGCTGGTCGC TCAGCCTTTT CGGCCAGAAC CTGACCCGCA CCGCCTTCCT GACCGGCGGC CTCCAGTCCG GGACCATCAA CCGCCCCACG ATCAACCAGC CGCGAACCTA TGGGCTCAGG GCCCGCATGA ACTTCTAG
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Protein sequence | MRKSEALCGS LGMALLAASS GASAQVSQTS NIDGGIADIV VTAQRREESA QRAPIILNTL TAGDLQGVSD VRELQYAVPG IQFANAGNAV QTYIRGIGSF NAKSVQESAV AYSVDGVYLF TTTQVSPALF DLTRVEVLKG PQGTLYGRNA SGGAVNIITQ GAKLGEIEGF VSGEAGNYDL LHLTGAVNIP VAETLAVRLA AQHVRHDGYL SDGTSDDDTT AGRLRALWEP RSNLQVKLNV DIARVRTKGP GSVVFPFVDP DHPWRGALDP ALDTGLSRVS GFRPLERPRN RLDQWSASAE LDWDFGFATF TLLPAYRHEH IDQVSYVPGY GTAEDAHIKQ SSLEARLSRD SGKLKWVAGA YYLDVDIAQT FQINNPTPPV GRPAVNFLDN PNKLESWAVF GEATYELTER FRLTGGLRYT WERSISGGFQ NQTFPAPLAT PAFLPGTEPG DFVVDERVTD DAITWKVGAQ YDIAAESTIF ATVSRGFKGG GSYVDAASVD PTFEPETVVA YEFGSRNRFF DNKLQVNLEA FWWDIKNQQI AFLGFNSLNQ PKFQTVNAAN AKAYGGSVDL VWRATRNDTL RFSTEFVKSD YSNFVRVQPA APIGTRCATA PLAGRVAIDC SGFPMMRTPK WAGSAGYEHR IPLAGGAKVT LAGDMTFASS RFTSIDFSPV TRDKGYAVFN AEAAYHAPDD RWSLSLFGQN LTRTAFLTGG LQSGTINRPT INQPRTYGLR ARMNF
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