Gene Swit_1539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1539 
Symbol 
ID5198555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1711586 
End bp1713793 
Gene Length2208 bp 
Protein Length735 aa 
Translation table11 
GC content66% 
IMG OID640581087 
ProductTonB-dependent receptor 
Protein accessionYP_001262040 
Protein GI148554458 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000217846 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00247373 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGGAAAT CGGAAGCGTT ATGCGGTTCG TTGGGCATGG CCCTGCTGGC CGCGTCGTCG 
GGCGCCTCAG CACAAGTGTC ACAGACATCG AATATAGATG GCGGGATCGC CGATATCGTC
GTGACCGCGC AACGCCGCGA GGAATCCGCG CAACGTGCGC CGATCATCCT CAACACGCTC
ACCGCCGGCG ACCTGCAGGG CGTGTCCGAC GTGCGCGAGC TGCAATATGC CGTCCCCGGA
ATCCAGTTCG CGAACGCCGG CAACGCGGTG CAGACCTACA TCCGCGGCAT CGGGTCGTTC
AACGCCAAGT CCGTGCAGGA ATCGGCCGTC GCCTACAGCG TCGACGGCGT GTACCTGTTC
ACCACCACCC AGGTCTCGCC GGCGCTTTTC GATCTGACGC GAGTCGAGGT GCTCAAGGGC
CCGCAGGGCA CGCTCTACGG CCGCAACGCC AGCGGCGGCG CCGTCAACAT CATCACGCAG
GGCGCCAAGC TGGGAGAGAT CGAGGGCTTC GTCTCGGGCG AGGCCGGCAA TTACGACCTG
CTGCACCTCA CCGGCGCGGT CAACATCCCC GTCGCGGAGA CCCTGGCCGT CCGATTGGCC
GCCCAGCATG TCCGGCATGA CGGCTATCTG AGCGACGGCA CCAGCGACGA CGACACGACC
GCCGGGCGGC TTCGCGCACT GTGGGAGCCC CGGAGCAACC TGCAGGTGAA GCTCAACGTC
GATATCGCGC GGGTCAGGAC CAAGGGCCCA GGATCGGTCG TCTTCCCGTT CGTCGACCCC
GACCATCCCT GGCGCGGCGC GCTCGACCCC GCTCTCGACA CCGGCCTGTC GCGGGTGAGC
GGGTTTCGTC CGCTGGAGCG CCCCCGCAAC CGGCTCGATC AGTGGAGTGC GAGCGCCGAA
CTCGACTGGG ACTTCGGCTT CGCGACATTC ACATTGCTGC CGGCCTATCG ACACGAGCAT
ATCGACCAGG TCAGCTATGT GCCCGGCTAC GGCACCGCGG AGGACGCGCA CATCAAGCAG
TCCTCGCTCG AAGCGCGGTT GTCGAGGGAC AGCGGCAAGC TGAAGTGGGT CGCCGGCGCC
TATTATCTGG ACGTCGACAT CGCGCAGACC TTCCAGATCA ACAACCCGAC GCCGCCGGTC
GGAAGGCCGG CCGTGAACTT CCTCGACAAT CCGAACAAGC TCGAATCCTG GGCCGTGTTC
GGCGAGGCCA CTTATGAGCT GACCGAGCGC TTCCGCCTGA CCGGCGGCCT GCGCTATACG
TGGGAGCGCT CGATCAGCGG CGGTTTCCAG AACCAGACCT TTCCGGCGCC CCTCGCCACG
CCTGCCTTCC TCCCGGGCAC GGAGCCCGGC GACTTCGTCG TCGACGAGCG CGTGACCGAC
GACGCGATCA CCTGGAAGGT CGGCGCGCAA TATGACATCG CGGCCGAGTC CACCATCTTC
GCAACGGTCA GCCGCGGCTT CAAGGGCGGC GGTTCCTATG TCGACGCCGC GAGCGTCGAT
CCGACGTTCG AGCCCGAAAC GGTGGTCGCC TACGAGTTCG GGTCGCGCAA CCGCTTCTTC
GACAACAAGC TTCAGGTGAA CCTGGAAGCG TTCTGGTGGG ACATCAAGAA CCAGCAGATC
GCGTTTCTCG GCTTCAACTC GCTGAACCAG CCGAAATTCC AGACGGTCAA TGCCGCGAAC
GCCAAGGCCT ATGGCGGAAG CGTCGACCTG GTCTGGCGCG CGACCCGCAA CGACACGCTC
CGCTTCTCCA CCGAATTCGT GAAGTCGGAT TACAGCAACT TCGTCCGGGT CCAGCCGGCA
GCGCCGATCG GGACGCGTTG CGCCACCGCG CCGCTCGCGG GCCGCGTCGC CATCGACTGC
TCCGGTTTCC CGATGATGCG GACGCCCAAA TGGGCCGGCT CGGCGGGTTA CGAACACCGC
ATCCCCCTCG CCGGCGGCGC CAAGGTGACG CTGGCCGGCG ACATGACCTT TGCCTCGTCG
CGCTTCACCT CGATCGACTT CAGTCCGGTG ACGCGCGACA AGGGATATGC GGTGTTCAAT
GCCGAAGCGG CCTATCATGC GCCCGACGAT CGCTGGTCGC TCAGCCTTTT CGGCCAGAAC
CTGACCCGCA CCGCCTTCCT GACCGGCGGC CTCCAGTCCG GGACCATCAA CCGCCCCACG
ATCAACCAGC CGCGAACCTA TGGGCTCAGG GCCCGCATGA ACTTCTAG
 
Protein sequence
MRKSEALCGS LGMALLAASS GASAQVSQTS NIDGGIADIV VTAQRREESA QRAPIILNTL 
TAGDLQGVSD VRELQYAVPG IQFANAGNAV QTYIRGIGSF NAKSVQESAV AYSVDGVYLF
TTTQVSPALF DLTRVEVLKG PQGTLYGRNA SGGAVNIITQ GAKLGEIEGF VSGEAGNYDL
LHLTGAVNIP VAETLAVRLA AQHVRHDGYL SDGTSDDDTT AGRLRALWEP RSNLQVKLNV
DIARVRTKGP GSVVFPFVDP DHPWRGALDP ALDTGLSRVS GFRPLERPRN RLDQWSASAE
LDWDFGFATF TLLPAYRHEH IDQVSYVPGY GTAEDAHIKQ SSLEARLSRD SGKLKWVAGA
YYLDVDIAQT FQINNPTPPV GRPAVNFLDN PNKLESWAVF GEATYELTER FRLTGGLRYT
WERSISGGFQ NQTFPAPLAT PAFLPGTEPG DFVVDERVTD DAITWKVGAQ YDIAAESTIF
ATVSRGFKGG GSYVDAASVD PTFEPETVVA YEFGSRNRFF DNKLQVNLEA FWWDIKNQQI
AFLGFNSLNQ PKFQTVNAAN AKAYGGSVDL VWRATRNDTL RFSTEFVKSD YSNFVRVQPA
APIGTRCATA PLAGRVAIDC SGFPMMRTPK WAGSAGYEHR IPLAGGAKVT LAGDMTFASS
RFTSIDFSPV TRDKGYAVFN AEAAYHAPDD RWSLSLFGQN LTRTAFLTGG LQSGTINRPT
INQPRTYGLR ARMNF