Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1534 |
Symbol | |
ID | 5196195 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 1703805 |
End bp | 1706120 |
Gene Length | 2316 bp |
Protein Length | 771 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640581082 |
Product | TonB-dependent receptor |
Protein accession | YP_001262035 |
Protein GI | 148554453 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00336206 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATGACA GGCCGCATAT AGGTCAACGC TATATCAGAC TGTTCGGCTT GACGGTTTCG TTGGTGGCGT TGGCGCTGGG CCAACAGGCA CAGGCCCAGA AGGTCACTCA GCCGGCGGCG GATCAGGCCG TCAATGCCGC CGACGCCGAC GAGATCCTCG TCACCGCGCA GCGGCGTACC CAGAACATCC TCGACGTGCC GATCGCGATC ACAGCCTTTT CGGGCAACCA GCTCAACGAA CTGGGCGTGA GGGACGCCCG CCAGCTCGGC GCGATCACGC CGGGCCTCAT GGTGAAGCCG TCGCTGAGCG ATCAGAATCT GGTCTTTACG ATCCGCGGCG TCGGCATCAA CTCGTTCTTC GCGGCGAACA ATCCGTCGAC CAGCGTCTAT GTGAACCAGG TTCCGCTGTC CTTCTCGCCG ATGCTCGCGT TCCAGATGTT CGACATTGAG CGCATCGAGG TGCTCAAGGG ACCGCAGGGA ACGCTCTACG GCCGCAACAC CACGAGCGGC GCGGTGAACT TCATCACGCG CAAGCCTTCC GCCGACTGGA ACGGTTTTCT CCAGGGCGAC TATGGCAGAT ATGACGATCT CCGCTTGGAA GGCGCGGTCG GCGGTCCGGT CGCGCCGGGA CTCAACTTCC GTCTCGCCGC AACGACCCGG CAGCGGGGCA CCGGCTGGCA GTTCAATCGC GTGACCGGCA AGCATATCGG CGAGCAACAC TATACCGCCG GCCGGTTCCA GCTCGGATGG GAGCCGAGCG ACAATCTCAA CATCCTCCTG GAAGCCCATG GCGGCCGGAC GCGCGGGGAC TCGCTCGAAT ATGAACATGT CGGCGTGCGA CAGCCGGCGG CCCGAACGGC GACCTGCGCG CCCTTCCTCG CCGGCCATCG GGCCGAAGGA CAGTGCGTGG CGCTCTCGGG ATATTTCGAT CCGGACAACG ATCCCTATGC CGGCGACTAT AATGATCCCA ATTCCATCCA CACCGATACC TATGGCGCGT CGGCCACGGT CGAGTGGAAC CTGCCGACGA TGACCCTGAC CGCGATCGGC GGCCATGAAT ATTTCAAGCG GCGGCTGGAG TTCGACGGCG ACGGCTCGCC GTTCGCGGCG TCGGGCAACC GGTTCGATGA CAAGATCAAG TCGACGTCCA CCGAAGTCCG GCTGAGCTCG AACAAGGAAT GGAGCTTCGA ATGGATTCTC GGCGCGACCT ATTCGCATGA CGACATCGGC GGCGACTTCC TGTCGGATGC GACCTCGGCA TTGAACTCGA TTGTGTCGGC GCCCTATGAG CAGAAGACCG ACGCCTATGC CGCCTATGCC AATGTCATCG TGCCGCTCGT CGGCCGGCTG AAGCTGAACG GCGGGCTGCG CTACACGCAC GAGAAGCGCA GCTTCCTCAA CGTCACCCGC GACCTCGCCC CCTATGGCAC GGCGGCGAGC CAGTTGCTGG CCCGCGGGAT CTGTCGCCCG CAGAGCGATC CGTCTGTGGC GCCTGTGATC TGCTCGAGCC AGACCGGTTC GTTTAGCAAT AGCGACCTCT CCTGGACGGC CGGGCTGGAC TACAAGCTCG AAGGCGACGG CCTGGTCTAT GCCAAGGTGA GCAAGGGCTT CAAAAGCGGC GGCATCAATG CCGCGATCAA CTTCGGCGCG AGCGGCACGC CATTCAAGCC CGAGACGTTG TACGCCTATG AAACCGGCCT GAAGGGCTCC TTCCTCGACC GGCGGCTGCG CTATTCGACC GCCGTCTACT ATTATGACTG GCGCGACATG CAGGTCTTCA CCCTCACCCA GCAGGGGCCG CTGTCGGTGC GCGTGCTGAC CAACGCCGGC CAGGGCGAGG CCTATGGTGC GGAAGGCGAT CTGACCTACC TGGCTTCGGA TTTCCTGACG CTGACCTTCG GCGGCAATTA CAATCACACC AAGATCAAGA AATACGTCAC CACCGTCGCC GCGCAGGACG CGACCGGCAA TCAATTCGCC AACAGCCCGA AATGGACCCT CTTCGGCCTG GTGAAGCAAC AGATCCCGCT CGGCGACGAT TATCGCGCGA CCGTCACCGT CGATGCGAAT TACCGGTCCA GCCAGTTCTT CGAGATCGCC AACCGGCCGA TCTTCCGCGA GCCCGGCTAT GCCCTGGTCA ACGCCCGGCT CGCCTTCGCG CCGACGGGTG GCGCCTGGGA AATCGCGTTT TGGGCCAAGA ACCTGTTCGA CAAGCGTTAT CGGGTGGACA TGATCGAGGT CACCGCGGCG GGCGCCGCCT TGAACGCCTA TGGCGAACCG CGCACCTACG GCGCAAGCGC GCGATACACC TTTTGA
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Protein sequence | MNDRPHIGQR YIRLFGLTVS LVALALGQQA QAQKVTQPAA DQAVNAADAD EILVTAQRRT QNILDVPIAI TAFSGNQLNE LGVRDARQLG AITPGLMVKP SLSDQNLVFT IRGVGINSFF AANNPSTSVY VNQVPLSFSP MLAFQMFDIE RIEVLKGPQG TLYGRNTTSG AVNFITRKPS ADWNGFLQGD YGRYDDLRLE GAVGGPVAPG LNFRLAATTR QRGTGWQFNR VTGKHIGEQH YTAGRFQLGW EPSDNLNILL EAHGGRTRGD SLEYEHVGVR QPAARTATCA PFLAGHRAEG QCVALSGYFD PDNDPYAGDY NDPNSIHTDT YGASATVEWN LPTMTLTAIG GHEYFKRRLE FDGDGSPFAA SGNRFDDKIK STSTEVRLSS NKEWSFEWIL GATYSHDDIG GDFLSDATSA LNSIVSAPYE QKTDAYAAYA NVIVPLVGRL KLNGGLRYTH EKRSFLNVTR DLAPYGTAAS QLLARGICRP QSDPSVAPVI CSSQTGSFSN SDLSWTAGLD YKLEGDGLVY AKVSKGFKSG GINAAINFGA SGTPFKPETL YAYETGLKGS FLDRRLRYST AVYYYDWRDM QVFTLTQQGP LSVRVLTNAG QGEAYGAEGD LTYLASDFLT LTFGGNYNHT KIKKYVTTVA AQDATGNQFA NSPKWTLFGL VKQQIPLGDD YRATVTVDAN YRSSQFFEIA NRPIFREPGY ALVNARLAFA PTGGAWEIAF WAKNLFDKRY RVDMIEVTAA GAALNAYGEP RTYGASARYT F
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