| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1534 |
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| Symbol | |
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| ID | 5196195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1703805 |
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| End bp | 1706120 |
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| Gene Length | 2316 bp |
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| Protein Length | 771 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640581082 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001262035 |
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| Protein GI | 148554453 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00336206 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGACA GGCCGCATAT AGGTCAACGC TATATCAGAC TGTTCGGCTT GACGGTTTCG
TTGGTGGCGT TGGCGCTGGG CCAACAGGCA CAGGCCCAGA AGGTCACTCA GCCGGCGGCG
GATCAGGCCG TCAATGCCGC CGACGCCGAC GAGATCCTCG TCACCGCGCA GCGGCGTACC
CAGAACATCC TCGACGTGCC GATCGCGATC ACAGCCTTTT CGGGCAACCA GCTCAACGAA
CTGGGCGTGA GGGACGCCCG CCAGCTCGGC GCGATCACGC CGGGCCTCAT GGTGAAGCCG
TCGCTGAGCG ATCAGAATCT GGTCTTTACG ATCCGCGGCG TCGGCATCAA CTCGTTCTTC
GCGGCGAACA ATCCGTCGAC CAGCGTCTAT GTGAACCAGG TTCCGCTGTC CTTCTCGCCG
ATGCTCGCGT TCCAGATGTT CGACATTGAG CGCATCGAGG TGCTCAAGGG ACCGCAGGGA
ACGCTCTACG GCCGCAACAC CACGAGCGGC GCGGTGAACT TCATCACGCG CAAGCCTTCC
GCCGACTGGA ACGGTTTTCT CCAGGGCGAC TATGGCAGAT ATGACGATCT CCGCTTGGAA
GGCGCGGTCG GCGGTCCGGT CGCGCCGGGA CTCAACTTCC GTCTCGCCGC AACGACCCGG
CAGCGGGGCA CCGGCTGGCA GTTCAATCGC GTGACCGGCA AGCATATCGG CGAGCAACAC
TATACCGCCG GCCGGTTCCA GCTCGGATGG GAGCCGAGCG ACAATCTCAA CATCCTCCTG
GAAGCCCATG GCGGCCGGAC GCGCGGGGAC TCGCTCGAAT ATGAACATGT CGGCGTGCGA
CAGCCGGCGG CCCGAACGGC GACCTGCGCG CCCTTCCTCG CCGGCCATCG GGCCGAAGGA
CAGTGCGTGG CGCTCTCGGG ATATTTCGAT CCGGACAACG ATCCCTATGC CGGCGACTAT
AATGATCCCA ATTCCATCCA CACCGATACC TATGGCGCGT CGGCCACGGT CGAGTGGAAC
CTGCCGACGA TGACCCTGAC CGCGATCGGC GGCCATGAAT ATTTCAAGCG GCGGCTGGAG
TTCGACGGCG ACGGCTCGCC GTTCGCGGCG TCGGGCAACC GGTTCGATGA CAAGATCAAG
TCGACGTCCA CCGAAGTCCG GCTGAGCTCG AACAAGGAAT GGAGCTTCGA ATGGATTCTC
GGCGCGACCT ATTCGCATGA CGACATCGGC GGCGACTTCC TGTCGGATGC GACCTCGGCA
TTGAACTCGA TTGTGTCGGC GCCCTATGAG CAGAAGACCG ACGCCTATGC CGCCTATGCC
AATGTCATCG TGCCGCTCGT CGGCCGGCTG AAGCTGAACG GCGGGCTGCG CTACACGCAC
GAGAAGCGCA GCTTCCTCAA CGTCACCCGC GACCTCGCCC CCTATGGCAC GGCGGCGAGC
CAGTTGCTGG CCCGCGGGAT CTGTCGCCCG CAGAGCGATC CGTCTGTGGC GCCTGTGATC
TGCTCGAGCC AGACCGGTTC GTTTAGCAAT AGCGACCTCT CCTGGACGGC CGGGCTGGAC
TACAAGCTCG AAGGCGACGG CCTGGTCTAT GCCAAGGTGA GCAAGGGCTT CAAAAGCGGC
GGCATCAATG CCGCGATCAA CTTCGGCGCG AGCGGCACGC CATTCAAGCC CGAGACGTTG
TACGCCTATG AAACCGGCCT GAAGGGCTCC TTCCTCGACC GGCGGCTGCG CTATTCGACC
GCCGTCTACT ATTATGACTG GCGCGACATG CAGGTCTTCA CCCTCACCCA GCAGGGGCCG
CTGTCGGTGC GCGTGCTGAC CAACGCCGGC CAGGGCGAGG CCTATGGTGC GGAAGGCGAT
CTGACCTACC TGGCTTCGGA TTTCCTGACG CTGACCTTCG GCGGCAATTA CAATCACACC
AAGATCAAGA AATACGTCAC CACCGTCGCC GCGCAGGACG CGACCGGCAA TCAATTCGCC
AACAGCCCGA AATGGACCCT CTTCGGCCTG GTGAAGCAAC AGATCCCGCT CGGCGACGAT
TATCGCGCGA CCGTCACCGT CGATGCGAAT TACCGGTCCA GCCAGTTCTT CGAGATCGCC
AACCGGCCGA TCTTCCGCGA GCCCGGCTAT GCCCTGGTCA ACGCCCGGCT CGCCTTCGCG
CCGACGGGTG GCGCCTGGGA AATCGCGTTT TGGGCCAAGA ACCTGTTCGA CAAGCGTTAT
CGGGTGGACA TGATCGAGGT CACCGCGGCG GGCGCCGCCT TGAACGCCTA TGGCGAACCG
CGCACCTACG GCGCAAGCGC GCGATACACC TTTTGA
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| Protein sequence | MNDRPHIGQR YIRLFGLTVS LVALALGQQA QAQKVTQPAA DQAVNAADAD EILVTAQRRT
QNILDVPIAI TAFSGNQLNE LGVRDARQLG AITPGLMVKP SLSDQNLVFT IRGVGINSFF
AANNPSTSVY VNQVPLSFSP MLAFQMFDIE RIEVLKGPQG TLYGRNTTSG AVNFITRKPS
ADWNGFLQGD YGRYDDLRLE GAVGGPVAPG LNFRLAATTR QRGTGWQFNR VTGKHIGEQH
YTAGRFQLGW EPSDNLNILL EAHGGRTRGD SLEYEHVGVR QPAARTATCA PFLAGHRAEG
QCVALSGYFD PDNDPYAGDY NDPNSIHTDT YGASATVEWN LPTMTLTAIG GHEYFKRRLE
FDGDGSPFAA SGNRFDDKIK STSTEVRLSS NKEWSFEWIL GATYSHDDIG GDFLSDATSA
LNSIVSAPYE QKTDAYAAYA NVIVPLVGRL KLNGGLRYTH EKRSFLNVTR DLAPYGTAAS
QLLARGICRP QSDPSVAPVI CSSQTGSFSN SDLSWTAGLD YKLEGDGLVY AKVSKGFKSG
GINAAINFGA SGTPFKPETL YAYETGLKGS FLDRRLRYST AVYYYDWRDM QVFTLTQQGP
LSVRVLTNAG QGEAYGAEGD LTYLASDFLT LTFGGNYNHT KIKKYVTTVA AQDATGNQFA
NSPKWTLFGL VKQQIPLGDD YRATVTVDAN YRSSQFFEIA NRPIFREPGY ALVNARLAFA
PTGGAWEIAF WAKNLFDKRY RVDMIEVTAA GAALNAYGEP RTYGASARYT F
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