Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_1533 |
Symbol | |
ID | 5196194 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 1702741 |
End bp | 1703733 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640581081 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001262034 |
Protein GI | 148554452 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00655732 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCCGTGG GGGACGATCG ACAGTCGGAA ATCGTGCACA ACGATGCGGC CACGGCGTCG GCCTATATGC GCGATCAATT GGCGCCGCAC CGATTGCGGG CCGGCGTCGG GCCGTTCGAT GCCCGCTTCC GTTCCATCCA TATCGGGTCG GCCGTCCTGC TCGATATCGC CTATGGCACC GACGTCGAGA TCGAGGCCGA GGCCTATAAG GATCTCTACT TCGTCCATGC CGCGACATCG GGCCGCGGCG TCGCGGAAGC CGGCTCGAAG AGCTATGAGA TACGGCCCGC GAACCTCCTG ATCAGCGATC CCGGGCAGCA GGCCCGGGTG CGGTGGGACC GGGAGAGCCG GCATAGGACG CTGCGCATCA AGCGCGACGT CATCGAGGAC CGGCTTCGCG AGCTTCTCAA CAAGAACCTG CACGATCCGA TCACCTTCGA ACCCAACGTC TCCGACGATC TTCCGCTGAC CGCCATGTGG CGGTCGACCA TCTCCTACGT CTATCAGCAG GTCGTCGATT TCCCCGAGCT TTCGAGCGCG GCCCATATGG GGCGGATGTA TCTCAACATC CTGGTGGATA TGCTGCTCCT CAACCAGGAG CATAATTATT CCGACGATAT CCGCGACCTG ACCGGGGCGG TGCATCCCTG GCATGTCCGG AAGGCCAAGC AATATATCGA CCAGTTGATC GAGGCCGGCT CCTTCGATGA CGAGGAACTC CGGATCGAGG CGATCGCCGA ATATACCGGC ATCAGCACCA GGACGCTCCA GGCGTCGTTC GCGCGCTTCG TCGGGGATAC GCCGCTCAAA TATATCCGCC ACCGCAAGAT CGAGCGGCTT CACCTGGCCC TGCAGAATGC TCCGACGAGC AAGCGCGTGA CCGATGTCAT GACCGATTTG GGGATCAACA ACTTCGGGCG CTATTCGGGC TATTACAAGC GCCGTTACGG AACCTCGCCC TCGTCGACCC TGCGCGACCG CCTGCTGAGC TGA
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Protein sequence | MAVGDDRQSE IVHNDAATAS AYMRDQLAPH RLRAGVGPFD ARFRSIHIGS AVLLDIAYGT DVEIEAEAYK DLYFVHAATS GRGVAEAGSK SYEIRPANLL ISDPGQQARV RWDRESRHRT LRIKRDVIED RLRELLNKNL HDPITFEPNV SDDLPLTAMW RSTISYVYQQ VVDFPELSSA AHMGRMYLNI LVDMLLLNQE HNYSDDIRDL TGAVHPWHVR KAKQYIDQLI EAGSFDDEEL RIEAIAEYTG ISTRTLQASF ARFVGDTPLK YIRHRKIERL HLALQNAPTS KRVTDVMTDL GINNFGRYSG YYKRRYGTSP SSTLRDRLLS
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