| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1519 |
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| Symbol | |
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| ID | 5199348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1685904 |
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| End bp | 1688039 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640581066 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001262020 |
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| Protein GI | 148554438 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTTTGCG GATTGGCGAG CGTCCTGCGA TACGGTAACA GTCCGGCAAT GACGAAGGGT
GTGGGCTCAA TCGGGGCAGC GGCTGCCAGC GCCGCCGCAG GGGGGCAGTT GCCTCTTTTC
CTGATATCCT TTCGTTATCG GAACGAATTG GCGCCATTGA TCGAGCGGAC CGGCCGGCGG
GTGATCGCCG CACGGCGGGC CGAAGCGGCC GGACGGCGCT TCATCGCCTC GGGCGCGACC
ATCGCCGTGA TCGACGCCCG CGACGCGGAG GAGGAGGCGG TCGCGGCCTG CGCCGCGATG
GCGGCGGCGG TCGGATCGAC GGGCTCCGCG CTGCTCGTGA TCGTCGACGA TATCGCCAGC
CTCGATCGCT ATCTGGCGGC CGGGGCGACC CATTATCTGG CGGCGTCCTT CGGGGAGGAG
GAGATGCGGA TCGCGCTGGC CTTCGCCGAT CGCCATGCCG AACGGCTGGC GGGGGGCGGC
CGTGCCGCGT CGGTCCGCGC CGCGCTGCGC CTGTCGGAAT CGGAGGCGTG GATCTGGAAG
CCCGGCGACC GGATGGTGAC GCTCAGCGCC GCGCTCGCCG ACCGGATCGG CGTGGCGACC
GAGACGGTGC CGATGTCGAT GCTGTTCCGG CTGATGGACC GCGAGAGCCG CCGCCTGGCG
CGGGAGGCGA TCGATCGCCT GCTGTCGACC GGCCGCTCGA CCGCCTTCGC CCATCGCAGC
CGCGCGCTCG GCGACCGGCT GGCGCACCAC ATCTCCTATG ACGAGGAGCG GCATGCGGTC
GTCGCCTGGG TCGAGGTCGA CCGCCGCGAC GGCGAGCCGG CCGGCGACGA CGGCGACGCC
CTGACCGGGC TGCCAGCGGT CGACCGCATC CGCCAATGGG TCGAACGGCG GCTGGCCGAC
GATCAGCTCG CCGAGCCGCG CTGCATCCTG CTGATGCTGG GCATCATGCG CTTCGGCCTG
GTCAACGCCG CCTTCGGCCG GCCGACCGGC GACGCGGTGC TGCAGGGCGT CGCGCGGCGG
ATCGAGCGGG TGATCGACCG CATCGGCCTC GACCAGACGA TGATCGCGCG CACCGCCGGC
TCCGAATTCA CCATCGCCCT CGGCGCGCCG GTGACCGCCG ACACAGCCGA GCTGATCGCC
AACCGGCTCG TCGAAAGCGT CGCCTGGCCG TTCGTGTCGG GGGATTCGCT CATCCCGCTG
TCCTGTCGTG TCGGCATCGC TGCGATCGAC GGCGATGCGC GACGCGACGC GGGGACGCTG
TTCCAGCGCG CGGCGGCGGC GCTCGCGGCG GCCAAGCATG GCGACACCGG CCTGGTCCGC
GCGCTCGACG CCGACAGCGA GGCGGAGGCG CACCGCCGCA ACCAGCTCGA GATCGACCTG
CGCCGGGCGC TCGATCATGA CCAAATCGAC ATCCTCTTCC AGCCGCAGGT CGATATCCGG
TCCGGCCAGA TCATGGGGGT CGAGGCGCTC GCCCGCTGGC GCCATCCGCA GCTCGGCGAG
CTGGGCGCCG TCCCGCTGTT CGCGACCGCT GCCCGGTCGG ACTTCGTCGT CCAGCTCTCG
ACCTATGTGC AGCAGCGCGC GCTCGAGGTC GCGGCGAGCT GGCCCGCTCA TATGGGCAAT
CTGCGCCTGT CGGTGAACGT CACCGCCGCC GACATCGCCC AGCCCAATTT CGTCGACGAC
TTCCTGGGCC GGGTCGACAA GGCCGGCTTC CCGCGCGACC GGCTGACCGT CGAGGTCACC
GAAAGCGGCC TGATCGCCGA TCTCGCCGGG GCGGCCGGGC TGCTCTCGCA ATTGCGCGGC
GCCGGCCTGC GGGTCGCGAT CGACGATTTC GGCACCGGCT ATTCGAGCCT CGCCTATCTC
AAGGCGCTGC CGCTCGACTA TCTCAAGATC GACAAGACCC TGGCGGAGGA CATCACCGGC
TCGACCCGCG ATCGCATCGT CGTGCGCGGC GTGATCGAGA TGGCCCGCTC GCTCGGCCTC
GCGGTGATCA CCGAGGGGGT CGAGACCAAG GCCCAGCTCT CGCTCCTCGC GCGTGAGGGG
TGCAACTATT ACCAGGGCTA TCTCTGCTCG CCTCCGATCG ACAGCGGTAC CCTGGAGGCG
ATGGTCGTCG ACCAGGCGAT GAGTAGCGTG GACTAA
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| Protein sequence | MLCGLASVLR YGNSPAMTKG VGSIGAAAAS AAAGGQLPLF LISFRYRNEL APLIERTGRR
VIAARRAEAA GRRFIASGAT IAVIDARDAE EEAVAACAAM AAAVGSTGSA LLVIVDDIAS
LDRYLAAGAT HYLAASFGEE EMRIALAFAD RHAERLAGGG RAASVRAALR LSESEAWIWK
PGDRMVTLSA ALADRIGVAT ETVPMSMLFR LMDRESRRLA REAIDRLLST GRSTAFAHRS
RALGDRLAHH ISYDEERHAV VAWVEVDRRD GEPAGDDGDA LTGLPAVDRI RQWVERRLAD
DQLAEPRCIL LMLGIMRFGL VNAAFGRPTG DAVLQGVARR IERVIDRIGL DQTMIARTAG
SEFTIALGAP VTADTAELIA NRLVESVAWP FVSGDSLIPL SCRVGIAAID GDARRDAGTL
FQRAAAALAA AKHGDTGLVR ALDADSEAEA HRRNQLEIDL RRALDHDQID ILFQPQVDIR
SGQIMGVEAL ARWRHPQLGE LGAVPLFATA ARSDFVVQLS TYVQQRALEV AASWPAHMGN
LRLSVNVTAA DIAQPNFVDD FLGRVDKAGF PRDRLTVEVT ESGLIADLAG AAGLLSQLRG
AGLRVAIDDF GTGYSSLAYL KALPLDYLKI DKTLAEDITG STRDRIVVRG VIEMARSLGL
AVITEGVETK AQLSLLAREG CNYYQGYLCS PPIDSGTLEA MVVDQAMSSV D
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