| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1518 |
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| Symbol | |
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| ID | 5199347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1682256 |
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| End bp | 1685843 |
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| Gene Length | 3588 bp |
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| Protein Length | 1195 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640581065 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001262019 |
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| Protein GI | 148554437 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAATG ACAAGACAGA TATGACCGAT CTCGACCGCA TCCTCGCCGC CTCCGAAGCG
CTGACCCTGT CGCGGGCGCC GATGGGCTTC CAGCCCTGGC TGGCCGCCGA CCTCGCCCGC
GCCGCGGCGG CGAAGGGCGG GCGGCTGGTG TTCGTCGCGG CCGACGACCA GGCGATGCAG
TCGCTGGCCG ACGCCGCGCG CTTCTTCGCG CCCGAGCTGA CGGTGCTCAC CTTCCCGGCC
TGGGACTGCC TGCCCTATGA CCGCGCGAGC CCGGCGCTGC GCGCGACCAG CGAGCGGCTC
GCCACCCTCC ATGCGTTGCA GGGCAAGCCC AGGGGGCCCG TCCTGGTCGC CACCACGGTC
AACGCCGTCA CCCAGCGGGT GCTCACCCCG TTCCGCATCC GCCAGCTCGT CGCCCGGCTG
GCGCCGGGCG AGCGGGTCGA CCGCGACCGG CTCGCCGCGA TGCTGCAGGC GAACGGCTAT
ATCCGCACCG ACACCGTCAC CGAGCAGGGC GAATATGCGG TGCGCGGCAG CCTGGTCGAC
CTGTTCCCGG CGGGCGAGCC CCATGCGCTG CGCCTCGACT TCTTCGGCGA CGAGATCGAG
AGCGTCCGCC AGTTCGACGC CACCGACCAG CGGACGATCG GCCCGGTCGA CGGCTTCACC
CTGCTGCCGG CCTCCGAAGC CCTGCTCGAC GAGGAGACGA TCAAGCGCTT CCGCGGCCGC
TATCGCGAGC GCTTCGGCGC CAGCGCGACC GGCGACCCGA TCTACCAGGC GGTGTCGGAC
GGCCGCCGCC TCGCCGGCAT GGACCATTGG CTGCCGCTGT TCGAGGAGCG GCTGGAGACG
CTGTTCGACC ATTTGGCGCC CGAAGACCTG ATCCTGCGCG AGGCCGGGTC GATCAAGGCG
GCCGAGGCCC GGTTCGAGGC GATCGCCGAC TATCACGCCA ACCGGGTCCG CGCCCGCACC
ACCGATCCGG GCAGCTACCG CCCGCTCGAA CCGGGCGAAC TCTATCTGGC CGCCGACGAA
TGGCGGACGG CGATCGCCGA CCGGCCGATC CACCTCGTCA CCCCCTTCGC CGAGCCGGAG
AGCGCCCGCG TGCTCGACCT GGGCGTCGAC GGCGCGCGCG ACTTCGCGCC CGAACGGACG
CAGGGCGTCA ACATCTACGA CGCGGTGATC GAGCATGTCG AAGCGCTCGG CAAGGCGGGC
AAGCGCGTGG TGCTGGCGAG CTATTCGACC GGCTCGCGCG AGCGTTTCGC CGGGCTGCTG
GCGGAACATG GCCTCGACCG GGGCGATCTG GTCGACGACT GGCAGAGCGC CATAACCCTC
CCCCTCCCGC TTGCGGGAGG GGGCCGGGGG GTGGGCCTTC CCCGCAAAGA AAACGATGGC
GCCCAGGCCG GAGGCCCACC CCCGCCCCCT CCCGCAAGCG GGAGGGGAGG CAATATGGTC
GCCCTCGCCG TCCTGCCGCT CGACCATGGC TTCACCAGCG GCGACATCGC GCTGCTGACC
GAGCAGGACA TGCTGGGCGA CCGGCTGGTC CGGCGGCAGA AGCGCAAGAA GTCGGCCGAC
GCCTTCCTCG CCGAACTGGC GACGCTCAGC CCCGGCGACC TGGTCGTCCA TATGGACCAC
GGCATCGGCC GCTATGAGGG GCTGACCTCG ATCCCGGTCG CGAAGGCGCC GCACGACTGC
GTCGCGCTGA CCTATGCCGG CGGCGACAAG CTCTACGTGC CGGTCGAGAA TATCGACGTG
CTCAGCCGCT ACGGCGCCGA GAACGAGGGC GTCCAGCTCG ACAAGCTGGG CGGCGTCGCC
TGGCAGGCGC GCAAGGCGCG GATGAAGGAG CGTATCCGCG AGATCGCGGG CGAGCTGATC
AAGACCGCCG CCGAACGCGC GCTCCGCCCG GCCGAGGCGA TCGAACCCGA CAGCGGCTAT
AACGAGTTCG TCGACCGCTT CCCCTATCAG GAGACCGAGG ACCAGGACCG CGCGATCGCC
GACGTGATCG AGGACCTGGC GGCGGGCAAG CCGATGGACC GGCTGGTCTG CGGCGACGTC
GGCTTCGGCA AGACCGAGGT CGCGCTGCGC GCCGCCTTCG TCGCGGCGCT GGGCGGGATG
CAGGTGGCGC TGATCTGCCC CACCACCCTG CTCGCGCGGC AGCATTACCG CAATTTCGTC
GAGCGCTTCC ACGGCATGCC GGTCAATATC GGCCATCTGT CGCGGCTCGT CTCGGCGGGC
GAAGCGAAGA GGACCAAGGA CGGTCTCGCC GACGGATCGA TCGACATCGT CATCGGCACC
CATGCGCTGC TCGCCAAGGG GATCGCGTTC AAGCGGCTCG GCCTCGTCAT CGTCGACGAG
GAGCAGCGCT TCGGGGTCAC CCACAAGGAA CGGCTGAAGG CGCTCAAGAC CGACGTCCAC
ATGCTGACGC TGACCGCGAC GCCGATCCCG CGCACCTTGC AGATGGCGAT GTCGGGCCTG
CGCGAGCTGA GCGTGATCCA GACCCCGCCG GTCGACCGGC TGGCGGTGCG CACCTATGTC
GCGCCGTGGG ACGGCGTGGT GATCCGCGAG GCGCTGCTGC GCGAGCATTA TCGCGGCGGG
CAGAGCTTCC TCGTCACCCC CCGGATCAAG GACCTGCCCG ACATCGAGGA CTATCTGCGC
AAGGAGGTCC CCGAGGTCAG CTATGTCGTC GCCCACGGCC AGATGGCGGC GGGCGAGGTC
GAGGAGCGGA TGTCGGCCTT CTACGACAAG AAGTTCGACA TCCTCGTGTC GACCACGATC
ATCGAGAGCG GGCTCGACAT CCCGTCGGCC AACACGCTGA TCGTCAACCG CGCCGACCGT
TTCGGCCTCG CCCAGCTCTA CCAGCTGCGC GGCCGGGTCG GCCGGTCGAA GACGCGCGCC
TATGCCTATC TGACGACCGG CGACCGGGGG CTCACCGAGA CCGCCGAGAA GCGGCTCCAC
ATCCTCCAGA ACATCGACAC GCTGGGGGCC GGCTTCCAGA TCGCCAGCCA CGACCTCGAC
ATCCGCGGCG CGGGCAACCT GCTCGGCGAC GAGCAGTCGG GCCATATCAA GGAGGTCGGC
TTCGAACTCT ACCAGTCGAT GCTGGAGGAG GCGATCCTCG ACGCCAAGGC GGGCGGGCTG
GCCGATACGA AGCGCGAGAG CTTCTCGCCG CAGATCAACG TCGACGCGCC GATCCTGATC
CCCGAGGACT ATGTCCCCGA CCTCGACCTG CGCATGGGCC TGTACCGCCG GATGAACGAG
GTGGAGACCC GCGCCGAGAT CGAGGCCTTC GCCGCCGAGC TGATCGACCG CTTCGGCAAG
CTTCCGGCCG CGACCCAGAA CCTGCTGACG GTGATCGAGA TCAAGCTCAA CTGCCGCAAG
GCCTGCGTCG CCAAGATCGA CACCGGCCCG CGCGGCGCGC TGGTGACCTT CCACAACGAC
GACTTCCCCG ACCTGCCGGG GCTGCTCGCC TATGTCGACC GGCTGAAGGA CAGCGCCCGG
CTGCGCCCCG ACAGCAAGCT GGTGATCACC CGCAACTGGC CGGAGCCGTC GCACCGGCTG
AACGGCGCGC TGCAATTGTC GCGGGGGTTG ATGAAGATCG TGGGGTGA
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| Protein sequence | MTNDKTDMTD LDRILAASEA LTLSRAPMGF QPWLAADLAR AAAAKGGRLV FVAADDQAMQ
SLADAARFFA PELTVLTFPA WDCLPYDRAS PALRATSERL ATLHALQGKP RGPVLVATTV
NAVTQRVLTP FRIRQLVARL APGERVDRDR LAAMLQANGY IRTDTVTEQG EYAVRGSLVD
LFPAGEPHAL RLDFFGDEIE SVRQFDATDQ RTIGPVDGFT LLPASEALLD EETIKRFRGR
YRERFGASAT GDPIYQAVSD GRRLAGMDHW LPLFEERLET LFDHLAPEDL ILREAGSIKA
AEARFEAIAD YHANRVRART TDPGSYRPLE PGELYLAADE WRTAIADRPI HLVTPFAEPE
SARVLDLGVD GARDFAPERT QGVNIYDAVI EHVEALGKAG KRVVLASYST GSRERFAGLL
AEHGLDRGDL VDDWQSAITL PLPLAGGGRG VGLPRKENDG AQAGGPPPPP PASGRGGNMV
ALAVLPLDHG FTSGDIALLT EQDMLGDRLV RRQKRKKSAD AFLAELATLS PGDLVVHMDH
GIGRYEGLTS IPVAKAPHDC VALTYAGGDK LYVPVENIDV LSRYGAENEG VQLDKLGGVA
WQARKARMKE RIREIAGELI KTAAERALRP AEAIEPDSGY NEFVDRFPYQ ETEDQDRAIA
DVIEDLAAGK PMDRLVCGDV GFGKTEVALR AAFVAALGGM QVALICPTTL LARQHYRNFV
ERFHGMPVNI GHLSRLVSAG EAKRTKDGLA DGSIDIVIGT HALLAKGIAF KRLGLVIVDE
EQRFGVTHKE RLKALKTDVH MLTLTATPIP RTLQMAMSGL RELSVIQTPP VDRLAVRTYV
APWDGVVIRE ALLREHYRGG QSFLVTPRIK DLPDIEDYLR KEVPEVSYVV AHGQMAAGEV
EERMSAFYDK KFDILVSTTI IESGLDIPSA NTLIVNRADR FGLAQLYQLR GRVGRSKTRA
YAYLTTGDRG LTETAEKRLH ILQNIDTLGA GFQIASHDLD IRGAGNLLGD EQSGHIKEVG
FELYQSMLEE AILDAKAGGL ADTKRESFSP QINVDAPILI PEDYVPDLDL RMGLYRRMNE
VETRAEIEAF AAELIDRFGK LPAATQNLLT VIEIKLNCRK ACVAKIDTGP RGALVTFHND
DFPDLPGLLA YVDRLKDSAR LRPDSKLVIT RNWPEPSHRL NGALQLSRGL MKIVG
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