Gene Swit_1500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_1500 
Symbol 
ID5200861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp1658711 
End bp1659223 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content72% 
IMG OID640581047 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001262001 
Protein GI148554419 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGCA CCGGCCTGGA GGCCGTCTTC CTGTCGAGCC GGGGCCGGCT GCTCGCCTTC 
CTGCGCGCGC ATGGGGCGGG CGACGCGGCC GAGGACCTGC TGCAGGAATT GTGGCTGAAG
GTCTCGTCGG CGCCGGCCGG GCCGATCGCC CAGCCGCTCT CCTATCTCTA CCGCGCCGCC
AACAACCTGA TGCTGGACCG CTATCGGTCG CAGCAGCAGG CGACCAAGCG CGACCAGGAC
TGGACCGAGG CCGCCACCAC CGTTCCCGGC CAGTCCGACG AGCCCTCGAC CGAACGGCGG
CTGATCGCGC GCGAGCAGCT CCGCCTCGCC CAGGCGGCGC TCGACGCGCT GGGCGAGCGG
CCCGCCGCGA TCTTCCGCCG CCACCGCATC GACGGGGTCG GCCAGCGCGA GATCGCCGAC
GAGTTCGGGG TCAGCATCAG CACGGTCGAA AGCGACCTGC GCCGCGCCTA TCGCGCGATG
ATCGAGCTGA GGAGCAGCTT CGATGAGGGA TGA
 
Protein sequence
MSSTGLEAVF LSSRGRLLAF LRAHGAGDAA EDLLQELWLK VSSAPAGPIA QPLSYLYRAA 
NNLMLDRYRS QQQATKRDQD WTEAATTVPG QSDEPSTERR LIAREQLRLA QAALDALGER
PAAIFRRHRI DGVGQREIAD EFGVSISTVE SDLRRAYRAM IELRSSFDEG